<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32225

Description Uncharacterized protein
SequenceMALVTPIPAMGERAGSMRFHGIGSPGSRSSRSGIMDEPVSRLIEEKIFVAVDKHVAKSKSTLIWALQNTGGKKICLIHVHQPSQMIPVMGAKFPVGSVKDEEVRVFREKEREKVHMILDEYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMGAAADRHYSRRMTDLKSRKAIFVRREAPTLCQIWFTCKGYLIHTREATLDDSESEYASPRPSISASDLLQTFSTPESEHQHISRVQSTDSVRQLVSNGSSTEHSGRVSNGSSNTDDEERVSDASEVTGSATVMSTVDENSGHSSPSNFPDGVDDSFNNKIRKATSEAHSSKQEAFAETLRRQKAEKNALDAIRRAKQSESAYSEELKRRKDTEIAVAKEKERFVTIKKEQEVIMEELQSAMDQKAMLESQIAESDGTMEKLHQKLDIAVKLLQKLKDEREELQTERDRALREAEELRSRAETSTLQLPQYFTDFSFSEIEEATNHFDSTLKIGEGGYGSIYIGILRHTQVAIKMLNPNSSQGPVEYQQEVDVLSKMRHPNIITLIGACPEGWSLVYEYLPDGSLEDRINCKDNSPPLSWQNRVRIATEICAALVFLHSNKAHSLVHGDLKPANILLDSNLVSKLSDFGTCSLLHPNGSKSVRTDVTGTVAYLDPEASSSGELTPKSDVYSFGIILLRLLTGRPATRISNEVKYALDNGTLNDLLDPLAGDWPFVQAEQLARLALRCCETVSENRPDLGTEVWRVLEPMRASSGGSSSFHLGRNEHRIAPPYFICPIFQEVMQDPHVAADGFTYEAEAIRAWLDSEHDTSPMTNVKLSHTSLIANHALRSAIQEWLQHHW
Length839
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.06
Grand average of hydropathy-0.473
Instability index48.91
Isoelectric point5.83
Molecular weight93812.72
Publications
PubMed=23749190

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32225
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     201.80|      55|      63|     210|     266|       1
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  136-  171 (35.76/16.73)	......................FIEMESIENGIVQLIS..ELGIRKLVMGAAADRHySRR
  210-  266 (85.43/56.78)	DDseSEYASPRPSISASDLLQTFSTPESEHQHISRVQS..TDSVRQLVSNGSSTEH.SGR
  275-  331 (80.61/47.97)	DD..EERVSDASEVTGSATVMSTVDENSGHSSPSNFPDgvDDSFNNKIRKATSEAH.SSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.01|      22|      24|     433|     455|       2
---------------------------------------------------------------------------
  433-  454 (35.46/19.17)	QKLKD....EREELQTERDRALREAE
  469-  494 (32.55/13.14)	QYFTDfsfsEIEEATNHFDSTLKIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.09|      15|      17|     626|     640|       4
---------------------------------------------------------------------------
  626-  640 (29.70/16.56)	DF.GTCSLLHPNGSKS
  644-  659 (22.38/10.94)	DVtGTVAYLDPEASSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.49|      13|     270|      99|     111|       6
---------------------------------------------------------------------------
   99-  111 (23.34/17.04)	KDEEVRVFREKER
  370-  382 (22.15/15.79)	KDTEIAVAKEKER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.70|      14|     103|     406|     431|       8
---------------------------------------------------------------------------
  389-  402 (23.46/20.47)	EQEVIMEELQSAMD
  413-  426 (24.24/15.84)	ESDGTMEKLHQKLD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32225 with Med32 domain of Kingdom Viridiplantae
Unable to open file!