<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32220

Description Uncharacterized protein
SequenceMNQQTPEEVSLGNNGEGGNNIETPATVEEEEKEEEEVQQKQEETVSKDPIVVSEEKSLEKSAEGEKEDDSNNMEVDLVSPATVFCVKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANPPFWIPIHIMIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPTQGSANLVHDATSWQCEHEWRQDIAVVTKWLAGASPYRWLSSKPSSGTNAKSTFEEKFLSQSSESSARWPNFLCVCSVFSSGSVQLHWSQWPSNQGDTAPKWFSTKKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFAPLAAYLFSWQEYLISEIKQGKKPTDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSNFGGKVPTQTVWVSRVDMSIPPTKDFKNHQIAAAGPSVDAEKEPDSGDDKGNKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAIAAPAFSPTSCCSASVWHDAVKDCTMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRSDGETISGINPEAMAVDPALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNIVTSPTQNVSSPATTQAGQPATPTTNSSGSTQMQAWMQGAIAKISSSNDGVSNPTANPISGSATFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCYFQRLSRFPQRNADVSSQKLQTGATSKLEEVNSAKPTPALNRIEEAQGFRGSQLGAGVKGIDENSARTTKMGSGNAGQGYTFEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGSEPEDMVLTDDASKLSNSLDLPDSTFSGICDGYNKVHSLWPRKRRMSERDAAFGSNTSVGLGAYLGIMGSRRDVVTATWKTGLEGVWYKCIRCLRQTSAFASPGTSKQPNPNERETWWTSRWVYCCPMCGGTWVRVV
Length1260
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.08
Grand average of hydropathy-0.261
Instability index45.51
Isoelectric point5.71
Molecular weight136456.02
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32220
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     203.60|      52|     110|     398|     449|       1
---------------------------------------------------------------------------
  398-  449 (87.40/45.00)	GKKPTDQDSSDAISLSCSPVSNFS....AYVSPEAAAQSAATT.....TWGSGVTAVAFDP
  454-  494 (36.91/14.88)	.............SVIAVVIVE.G....QYMSPYDPDEGPSITgwrvqRWESSVQPVVL..
  507-  561 (79.29/40.16)	GKVPTQTVWVSRVDMSIPPTKDFKnhqiAAAGPSVDAEKEPDS.....GDDKG.NKVVFDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.57|      13|      15|     848|     860|       2
---------------------------------------------------------------------------
  848-  860 (23.55/13.58)	PTQNVSSPATTQA
  866-  878 (24.02/14.02)	PTTNSSGSTQMQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     188.03|      42|      42|     283|     324|       3
---------------------------------------------------------------------------
  235-  280 (48.78/24.07)	.RWlSSKPS.SGTNAKSTFEEKflsqSSESSArWPNFLCVCSVFSSGS
  283-  324 (76.42/42.36)	LHW.SQWPSNQGDTAPKWFSTK....KGLLGA.GPSGIMAADAIITDS
  327-  363 (62.83/33.37)	MHV.AGVPIVNPSTIVVWEVTP........GP.G.NGLQATPKISTGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.39|      14|      15|     986|    1000|       4
---------------------------------------------------------------------------
  986- 1000 (19.84/15.99)	IEEAQGfRGSQLGAG
 1004- 1017 (24.55/14.18)	IDENSA.RTTKMGSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.77|      44|     445|     143|     213|       5
---------------------------------------------------------------------------
   96-  140 (78.83/28.88)	LHKMsVPE...LCRNFSAVAWCGK..LNAIACASETCAR...IPSSKANPPFW
  143-  194 (69.94/66.35)	IHIM.IPErptECAVFNVVADSPRdsVQFIEWSPTSCPRallIANFHGRITIW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.90|      13|     114|     814|     826|       6
---------------------------------------------------------------------------
  814-  826 (26.05/16.03)	HFITRLRRYASFC
  931-  943 (26.85/16.71)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.15|      10|      19|     766|     775|       7
---------------------------------------------------------------------------
  766-  775 (18.28/ 9.83)	VNPSALVFEP
  786-  795 (18.87/10.37)	INPEAMAVDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.56|      17|     422|     197|     213|       8
---------------------------------------------------------------------------
  197-  213 (33.24/18.64)	PTQ.GSANLVH.DATSWQC
  621-  637 (26.41/13.22)	PTScCSASVWH.DAVK.DC
  647-  663 (18.91/ 7.28)	PPA.LPRNQSKvDQSTWE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.53|      22|     529|     664|     686|      10
---------------------------------------------------------------------------
  664-  686 (40.27/24.29)	RAIAERFWWSLLVGVdWWDAVGC
 1195- 1216 (43.26/22.01)	RDVVTATWKTGLEGV.WYKCIRC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32220 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GTGSNRNIVTSPTQNVSSPATTQAGQPATPTTNSSGSTQ
2) MNQQTPEEVSLGNNGEGGNNIETPATVEEEEKEEEEVQQKQEETVSKDPIVVSEEKSLEKSAEGEKEDDSNNME
837
1
875
74










Molecular Recognition Features






MoRF SequenceStartStop




NANANA