<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32217

Description Uncharacterized protein
SequenceMQRYHAANCTSAVNNSAIGGASARDSGRADSSSIGNYSLNSRRPPPLTPYKLKCEKDGLNSRLGPPDFHPPTSSSPEENLTKEYVQFGYKETVDGLKESEEIILSQVHTFSKPVVIKCKEAVRKCLRAINESRALKRKAGQVYGVPLSGSLLCKPGFPEQRSCGEETKKKWIESLSQQHKRLRSLADNIPGYRRKTLFEVLIRNNVPLLRATWYIKVTYLNQVRPSPAAISSGTPDKTLASRCEQWTKDVIEYLQYLLDELLSRNSSFSAQQTRDRSPQMLYTGSVQKISPASASLYGEETSLHFKWWYMVRLLQWHHAEGLLFPNLIVDWVLRLLQEKEVFEILQLLLPIVYGVLESIVLSQTYVQSLVAIAVRFIQEPAPGGSDLVDNSRRAYTLSALTELVRYLVLAAPDTFVASDCFPLPPSVAACGPNDVSYSSKAYENLEKLRSNAAEVSIQFQGRGVDSRFEFLSFDYTISTIQRSADDLAKIASAGYPQHNVAKAVQALDKALSDGDVKAAYSYLFEDLCNGAVDETWIAEVSPCLRSSLRWIVAISTSFVCSVFFLIEWATCDFRDFRAGVPKDIKFSGRKDCSQVYLVIQLLKQKILGGEFARKGKIRRGNFLNVSKPNSSMDAFESPGPLHDIIVCWIDQHEVHRGGAKRLQLLVFELIRSGIFNPIAYVRQLIVSGMIDVIQPAVDPERRMRHHRILKQLPGCFVHETLEEAKLFGGEKLSEAVRTYSNERRLLLRELLVKKGKHWNNLKLSDQKSKKNSTSLPSVVFPRTCNAMADSEGPLKHTKSSVDIGELKERISALLQFPGMSCGVKNPMQDDFQSTVKRSSGSVYSKMYQPEATPGCEDCRRAKRQKMNDEKSSCYQGNSPTASDEEDNWWIKKGFKTLESSLKVDPQIELTKQVPRGRQKMARKTQSLAQLQAARIEGSQGASTSHVCDNKVSCPHHGPGVEGENHKVVDVFRTSTPGDIVSVGKSLKQLQFVDKRSIAVWLTTVVQQLVEEPEKNSVRVGQFNRGVPVEEKSTFRWKLGADELSTILFLLDISLDFVSVVKFIFWLLPKANSSPNFAVQGGRNLLIMPRNVENNMCEIGEAILVSSLRRYENILLSADLVPEAMTALMNRAASLMSSNGKISGSAAIVYARYILKRYGSLPSVVEWHNNFKATCEKRLLSELDHTRSGNGEYGIPLGVPAGVDNPDDYIRKKISIGGTRPSRVGLNMREVVQRHVEDATHYLRKLIGAGTMKASLAEKNEDGYQVAQQIVVGLMDCIRQTGGAAQEGDPTLVSSAVSAIINSVVLSMARISDFSLGSIHQNHPSGIDSSNTARYILQIHVTCLCLLKEALGERQSRVFEIALATESSTALAVAFAPGKGSRGQHQLSPESYDSNANNSTNDIPNGTGKIAVSRTTKITAAVSALVIGSITYGAITLERIVGLLRLKECLDFVQFVRRTKSSSNGSARSMGASKVENPIEVYVHWFRLLVGNCKTVSEGLVLELVGESSVLAITRMQRMLPLKLVFPPAYAIIAFVLWRPFVSNNNSNSSVHEDTHRLYQSLTIAFHDVIKHLPFRDVCLRDTQGLYELIVADSTDADFASVFESIGLDMHLKSVAFVPLRARLFLNSIIDCKVPSSGYSHEGVSEAKNRHQGNGTKLVDKLVSVLDCLQPAKFHWQWVELRLLLNEQALTEKLENHDMPLTDAIRSSCPTSEKPEASENEKNFIQILLTRLLVRPDAVPLFSEVVHLFGRSVEDSMLKQAEWFLAGQDVLFGRKTIRQKLIIVGESKGLPTKPQFWKPWGWCNNSSSDHITANKAVKKRKLEITSIEEGEVIEEGSGSRKVLLPRALDENSPSVGYGITTERAFVQLVLPCIDQSSDESRSTFVNELVRQFSNIEQQLSSVTNRSTTNNKHTGTASSGSEISSNKGSTRKGLRGGSPSLARRSSTNTTDTALPPSPAALRASMSLRLQFLLRLLPVICGEPSFRNTRHALASTIVRLLGSRVVYEDYAVCSPRSDPSKAEIESTIDPSAMGDLSSEVLFDRLLFVLHGLLSNHQPNWLKPRLPSCESSKDFSLFDRDAAESLQNELSRMQLPDTIRWRIQAAMPILFPSLRCSLSCQPHSVPPTALTLVQPSGSAAGGPIQRNSPVLPKTGTAAAQGKLKQTMLSPPQQQEADNADMVDPWTLLEDGTSSGLSSSNASNSSDMANLRATCWLKGAVRVRRTDLTYVGSVDDDS
Length2233
PositionKinase
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.07
Grand average of hydropathy-0.260
Instability index48.15
Isoelectric point8.87
Molecular weight247181.25
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32217
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.83|      11|      18|      39|      49|       1
---------------------------------------------------------------------------
   39-   49 (23.55/14.11)	LNSR.RPPPLTP
   59-   70 (20.27/10.84)	LNSRlGPPDFHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.33|      15|      18|    1928|    1943|       3
---------------------------------------------------------------------------
 1928- 1943 (21.96/14.41)	TRKGLrGGSPSLARRS
 1948- 1962 (26.37/12.93)	TDTAL.PPSPAALRAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.61|      19|      21|    1864|    1882|       6
---------------------------------------------------------------------------
 1864- 1882 (35.72/22.98)	FV.QLV..LPCIDQ..SSDESRST
 1883- 1906 (19.89/ 9.26)	FVnELVrqFSNIEQqlSSVTNRST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.66|      11|      21|     303|     315|       7
---------------------------------------------------------------------------
  303-  315 (17.48/15.56)	LHFKWwyMVRLLQ
  327-  337 (20.18/ 9.04)	LIVDW..VLRLLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.45|      48|     384|     770|     831|       9
---------------------------------------------------------------------------
  770-  831 (72.38/82.43)	KNSTSLPSVV.....FPRTCNAMADSEgpLKHTKSSvdIGELkerisallQFP.GMSCGVKNPmqDDF
 1155- 1208 (83.07/54.78)	KRYGSLPSVVewhnnFKATCEKRLLSE..LDHTRSG..NGEY........GIPlGVPAGVDNP..DDY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.38|      14|      23|     236|     249|      11
---------------------------------------------------------------------------
  236-  249 (26.72/17.15)	DKTL...ASRCEQWTKD
  259-  275 (18.66/ 9.54)	DELLsrnSSFSAQQTRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.57|      16|      21|     457|     475|      16
---------------------------------------------------------------------------
  457-  475 (23.89/27.09)	IQfqgRGVDSRFEFLSFDY
  480-  495 (26.68/18.15)	IQ...RSADDLAKIASAGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     193.64|      68|     385|     576|     669|      17
---------------------------------------------------------------------------
  576-  669 (85.43/116.93)	FRAGVPKDIKFSGrKDCSQvylvIQLL............KQKILggEFARKGKIRRGNFlNVSKPNSSMDAFEspgplhdiivcWidqhevhRGGAKRLQLLVFEL
  971- 1050 (108.21/70.62)	FRTSTPGDIVSVG.KSLKQ....LQFVdkrsiavwlttvVQQLV..EEPEKNSVRVGQF.NRGVPVEEKSTFR...........W.......KLGADELSTILFLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.26|      14|     582|     680|     694|      18
---------------------------------------------------------------------------
  681-  694 (24.50/18.29)	VRQLIVSGMIDVIQ
 1265- 1278 (25.76/12.82)	VAQQIVVGLMDCIR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32217 with Med12 domain of Kingdom Viridiplantae
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