<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32216

Description Uncharacterized protein
SequenceMASPYSSDDIHSPVNSTVVAVDKEKHSHCAVRWAVDHLINMIHNPVMILVHVRLKSSNLVLDDSDVATAILEYVSNNLVNNLVLGATSKNTFARSFMFSKPHEVQAHIMKSTPEFCSVYVISKGGKVHSSRPAQRHITNTLAPPRVPSSGFLIQSLSDSEQDLIPRVQRGARNKSNETTYPHNRAFNATQKSYNSLVNGSMDFNNGFNQAAFQRNPTLQNSFSDESEVGLSTMGSIDLSAHNNIDYYGASSSSEESIPQSTKDIEAEMRKLKLELKQTMDMYSSACKEALTAKRKANELNQWKIEEARKFEKARLSEEAALAVAEMEKAKCRAAEEAAEKAQRMAELEGQRRKQAEMKARSEEDDKDRAMSALAHNDVRYRKYTIEEIEEATDQFADHRKIGEGGYGPVFHGELDHTPVAIKVLRPDAVQGKQQFQQEVEVLCSIRHPHMVLLLGACPEYGCLVYEYMENGSLEDRLYRRGNSPPISWRKRFEIAAEIATALSFLHQAKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPVSVADNVTQFHMTSAAGTFCYIDPEYQQTGMLTTKSDVYSLGILLLQIITARQPMGLTHHVSRAISKGTFKEMLDPVVNDWPVEEAQSFAMLSLKCAELRKRDRPDLGKDVVPHLIRLRNFGYEL
Length668
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.07
Grand average of hydropathy-0.454
Instability index44.98
Isoelectric point6.58
Molecular weight74962.16
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32216
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.02|      19|      20|     309|     327|       1
---------------------------------------------------------------------------
  266-  304 (17.79/ 9.50)	AEMRKLklelkqtmdmyssackealtAKRKANELNQ...WKI
  305-  323 (29.87/21.30)	EEARKF....................EKARLSEEAA...LAV
  324-  344 (26.36/17.87)	AEMEK.....................AKCRAAEEAAekaQRM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.47|      13|      20|     171|     190|       2
---------------------------------------------------------------------------
  171-  183 (23.20/25.00)	ARNKSNETTYPHN
  203-  215 (23.27/ 7.68)	FNNGFNQAAFQRN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.17|      16|      32|      88|     108|       5
---------------------------------------------------------------------------
   88-  108 (19.01/21.15)	SKNTFARSfmfSKPheVQAHI
  122-  137 (30.16/14.52)	SKGGKVHS...SRP..AQRHI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.32|      18|      32|     238|     257|       6
---------------------------------------------------------------------------
  238-  257 (26.02/23.19)	LSAHNNIDYYgaSSSSEESI
  273-  290 (31.30/20.35)	LELKQTMDMY..SSACKEAL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32216 with Med32 domain of Kingdom Viridiplantae
Unable to open file!