<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32215

Description Uncharacterized protein
SequenceMEYANGDDWREELFQKIRSMKEIYLPHVNDLYQRTVGKLHHQQSLLYQQRSEHFEKLKQLVTMLESIIQFLSLPKSKIRPAIKDNVDKNEKKIICILEKHRLRQIKQSHVPAMQLNMSSSQRDPRQGSALNNANAGDWQEEIFQKIKLMKEMYLQDLAEIYQRVQFKLHQQDSIQQQQRSHMYEKLKLFEIMLEKMIQFLSVPKRNIMPAFEDKVAHYEQQIIGLLNVHRAMKPVQQGQLPQYAPVQDQPHDIQTNPQMQSMSMQGAGTWAQQGSLPNMQNNVLSSRPGVLAPHQNIPISIHTSSLASGQGNAVTNNGQQFVMGSINQPQLSSNLLQYQHVMQHQDQQMTQQLIQHPQLWIMQQQEQKQFQERQQAAQLQQGQQSQNQAFLEQMIPQLQLHQQFIPLQQYEQQREEVSGKVTYSLFPTQNVENQQRQVYQTQRALPEMPSNSKAQRESPNGGDWQEEVFQKIKPMKEMYLPDLAEMYHRVAVKLHQHQERSDEFEKLEKIKKRLERMIHFLSVPKSSITFMPDLKDNVDYYEKQIIHFLNMHKPRVGGYFI
Length561
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.07
Grand average of hydropathy-0.809
Instability index53.51
Isoelectric point8.95
Molecular weight66099.75
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32215
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     346.59|      59|     127|      42|     100|       1
---------------------------------------------------------------------------
   42-  100 (98.08/49.39)	QQSL.LY...QQRSEHFEKL..KQLVTMLESIIQFLSLPKSKI.........RPAIKDNVDKNE....................KKIICILEKH
  171-  229 (103.05/52.25)	QDSI.QQ...QQRSHMYEKL..KLFEIMLEKMIQFLSVPKRNI.........MPAFEDKVAHYE....................QQIIGLLNVH
  358-  401 (28.73/ 9.39)	QLWI.MQ...QQEQKQFQ..............................................erqqaaqlqqgqqsqnqaflEQMIPQLQLH
  402-  459 (33.87/12.36)	QQFIpLQqyeQQREEVSGKVtySLFPT......QNVENQQRQVyqtqralpeMPS..NSKAQRE....................SP........
  496-  552 (82.86/40.62)	.....QH...QERSDEFEKL..EKIKKRLERMIHFLSVPKSSI.......tfMPDLKDNVDYYE....................KQIIHFLNMH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     230.06|      41|     126|       1|      41|       2
---------------------------------------------------------------------------
    1-   41 (80.98/54.03)	MEYANGDDWREELFQKIRSMKEIYLPHVNDLYQRTVGKLHH
  130-  170 (82.01/54.81)	LNNANAGDWQEEIFQKIKLMKEMYLQDLAEIYQRVQFKLHQ
  460-  495 (67.08/43.50)	....NGGDWQEEVFQKIKPMKEMYLPDLAEMYHRVAVKLH.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.14|      15|      27|     294|     320|       3
---------------------------------------------------------------------------
  294-  320 (14.05/30.26)	HQnipiSIHTSSLASgqgnavtnNGQQ
  323-  337 (26.09/12.89)	MG....SINQPQLSS........NLLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.41|      15|      35|     236|     250|       4
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  236-  250 (29.14/13.08)	QQGQLP..QYAPVQDQP
  272-  288 (22.26/ 8.31)	QQGSLPnmQNNVLSSRP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32215 with Med15 domain of Kingdom Viridiplantae
Unable to open file!