<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32213

Description Uncharacterized protein
SequenceMIFIKEKTTNMTNRALVCLVFLMTALMSSVAIEGEDQKLGTVIGIDLGTTYSCVGVYHNKHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAAKNPERTIFDPKRLIGRKFDDPDVQRDIKFLPYKVVNKDGKPYIQVKVKGEVKVFSPEEISAMILTKMKETAEAFLGKNIKDAVITVPAYFNDAQRQATKDAGAIAGLNVVRIINEPTGAAIAYGLDKKGGESNILVYDLGGGTFDVSILTIDNGVFEVLSTSGDTHLGGEDFDHRVMDYFIKLVKKKYNKDISKDHKALGKLRRECERAKRALSNQHQVRVEIESLFDGVDFSEPLTKARFEELNMDLFKKTLEPVKKALKDAGLKKSDIDEIVLVGGSTRIPKVQQLLKDFFDGKEPNKGTNPDEAVAYGAAVQGGVLSGEGGEETQNILLLDVAPLSLGIETIGGVMTNIIPRNTAIPTTKSQVFTTYQDQQTTVTIKVYEGERSMTKDNRELGNFDLTGILPAPRGVPQIMVTFVVDANGILQVKAEDKVAKTSQSITITNDKGRLTEEEIEKMIREAEEFAEEDRIVKEKIDARNKLETYVYNMKSTMADKEKLAEKISDEDKEKMEEVLKEVLDWLEENVNAEKEDYDEKMKEVESVCNPVIKSVYEKTSGDSEDDGGDDHDEL
Length665
PositionUnknown
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.06
Grand average of hydropathy-0.435
Instability index35.19
Isoelectric point5.02
Molecular weight73934.17
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32213
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.28|      27|      27|     600|     626|       1
---------------------------------------------------------------------------
  562-  592 (23.70/12.46)	EEDrivKEKIDARNK.....LETYVYnmkstmADKE
  600-  626 (45.27/30.66)	DED...KEKMEEVLKEVLDWLEENVN......AEKE
  629-  655 (41.31/27.32)	DEK...MKEVESVCNPVIKSVYEKTS......GDSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.43|      17|      18|     139|     155|       2
---------------------------------------------------------------------------
  139-  155 (26.91/17.08)	IQVKVKGEVKVFSPEEI
  159-  175 (25.52/15.83)	ILTKMKETAEAFLGKNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.12|      16|      16|     431|     446|       5
---------------------------------------------------------------------------
  431-  446 (27.44/18.84)	VAPLSLGIETI.GGVMT
  448-  464 (22.68/14.27)	IIPRNTAIPTTkSQVFT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.78|      19|     193|     214|     234|       6
---------------------------------------------------------------------------
  216-  234 (36.12/23.55)	AIAYG.......LDKKGGES..NILVYD
  403-  430 (23.66/ 7.62)	AVAYGaavqggvLSGEGGEEtqNILLLD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32213 with Med37 domain of Kingdom Viridiplantae
Unable to open file!