<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32212

Description Uncharacterized protein
SequenceMDNNNWRPSLPNGEPAMDSGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAVNQTDYLRKISMKMLTMETKSQNAAGSSSSIPAANNGTSMDSIPTNQGIHIPGSLPTNQSQAPQPLLSQTMQNNTASGMTGSTALPSSMPPVSSITNNNVASVVNQNTNMQNVAGMLQDSSGQHGLSSNMFSGSQRQMLGRQHAMSSQQQQQPQNTQYLYQQQLQQQLLKQNMQSGNVPNPNSLLPSHMQQQQQQQQNVLQPNQLHSSQQPGVPTSATQPSTVNSAPLQGLHTNQQSSPQLSAQQTTQSMLRQHQSSMLRPHPQSQQTSGIHQQQTSLPQQSISPLQQQQTQIMRQQVANGTGIQQKQMMGQHVVGDMQQQHQQRLINQQNNIMNIQQQQSQQQPQQQQKQQPPAQQQLMAQQNSLQGTHQQPLGTQSNVVGLQQPQQQMLNSQVGNSSLQNNQHQVHMLSQSTGGLQRTHQAGHGLFPSQGQQSQNQPSQQQMMPQLQSHHQQLGLQQQPNLLQQDVQQRLQASGQVTGSLLPPQNVVDQQRQLYQTQRTLPEMPSSSLDSTAQTESANGGDWQEEVFQKIKSMKETYLPDLNEIYQRVASKLQQDSIPQQQRSDQFEKLKQFKTMLERMIQFLSVSKSNIMPALKDKVAHYEKQIIGFLNMHRPRKPVQQGQLPQSQMQQPMQQPQSQTVQEQSHDNQTNPQMQSMSMQGAGPRAQQSSLPNMQNNVLSSRSGVSAPQQNIPSSIPASSLESGQGNALNNSQQVPMGSMQQNTSQQVNYSSASAQSGLSALQSNINQPQLSSSLLQHQHMKQQQDQQMTQQIKQQFQHRQMQQQQLQARQQQQQQQLQARQQAAQLQQMNDMNDLTSRQGMNVSRGMFQQHSLQGQRATYPLQQLKPGAVSSPQLLQGASPQMSQQHLSPQVDQKNLSTVNKMGTPLQPANSPFVVPSPSTPLAPSPMQVDSEKPSGTSSLSMGNIARQQVTGMQGVVQSLAIGTPGISASPLLQEFTSPDGSVLNPLITTSGKPSATELPIDRLIRAVKSISPQALSSAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQEGMMATKKMKRHTTAMPLSVASLGGSVGDNYKQYAGSETSDLESTATSDGKKARTETEHALLEEIKVINQRLIDTVVEISDDEDAADHSEGAISSKGCEGTTVKFSFIAVSLSPALKAHLSSTQMSPIQPLRLLVPCSYPNGSPSLLDKVPVEISKENEDLSSKAMARFNILLRSLSQPMSLKDMAKTWDACARAVICEYAQQFGGGTFSSKYGTWEKYVAAS
Length1344
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.03
Grand average of hydropathy-0.781
Instability index70.38
Isoelectric point9.34
Molecular weight147595.42
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32212
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     992.78|     125|     127|     207|     331|       1
---------------------------------------------------------------------------
   74-  202 (93.05/13.73)	......................NQT.............DYL...................RKISMKMLTMETK.S..QNaagssssIPAANNgtsmdsiptnqgiHIP.GS....LPTNQS.....QAPQPL.LS.........QTMQNNTA..SGMTGSTALPSS...M....P....PVSSITNNNVASvvNQNTNMQN..VAGM..........LQdssgQHgL..SSNM
  207-  331 (232.54/45.98)	QRQMLGRQHAMSSQ..QQQQ.PQNT.............QYL.................YQQQLQQQLLKQNMQ.S..GN.......VPNPNS.............LLP.SH....MQQQQQ.....QQQNVL.QP.........NQLHSSQQ..PGVPTSATQPST...VN..SA....PLQGLHTNQQSS..PQLSAQQT..TQSM..........LR....QH.Q..SSML
  332-  454 (148.02/26.44)	RPHPQSQQTSGIHQ..QQTSlPQQS.............ISP.................LQQQ.QTQIMRQQVA.N..GT.......GIQQKQ.............MMG.QHvvgdMQQQHQqrlinQQNNIM.NI.........QQQQSQQQ..PQ.QQQKQQP..........P....AQQQLMA.QQNS..LQGTHQQPlgTQS.......................NVVG
  459-  525 (102.71/15.96)	QQQMLNSQVGNSSL..QNNQ.HQ.V.............HML.................SQ...STGGLQRTHQ.A..G............HG.............LFP.SQ....GQQSQN.....Q....................................PS.....................QQQMM..PQLQSH.........................H.Q......
  526-  626 (89.17/12.83)	.............QlgLQQQ.PN.................L.................LQQDVQQRL.....QaS..GQ.......V.TG.S.............LLP.P..................QNVVdQQ.........RQLYQTQRtlPEMPSSSLD.ST...AQ..TE....SANG......GD..WQEEVFQK..IKSMketylpdlneIY....QR.V..ASKL
  627-  730 (88.29/12.63)	QQDSI.......PQ..QQRS.DQFEklkqfktmlermiQFLsvsksnimpalkdkvahYEKQIIGFL...NMH.R..PR.......KPVQQG.............QLPqSQ....MQ................QP..............MQQ..P.......QSQT...VQ..E.......QS.HDN.QTN..PQM........QSM..........................
  731-  829 (104.21/16.31)	.....SMQGAGPRA..QQSS.LPN......................................MQNNVL......SsrSG.......VSAPQQ.............NIP.SS....IPASSL.....ESG....QG.........NALNNSQQ....VPMGSMQQNTsqqVNysSA....S.......AQSG....LSA.....LQSN..........IN....QP.QlsSSLL
  830-  941 (134.78/23.38)	Q.....HQHM..KQ..QQDQ..QMT.............QQI.................KQQFQHRQMQQQQLQ.A..RQ.....................................QQQQQ.....QLQARQ.QAaqlqqmndmNDLTSRQG..MNVSRGMFQQHS...LQ..GQratyPLQQLKPGAVSS..PQL.LQGA..SPQM..........SQ....QH........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     221.01|      70|     109|     960|    1038|       2
---------------------------------------------------------------------------
  960- 1021 (78.79/47.38)	.................PLQPAN....SPFVVP......S..PST...PLAPSPMQVDSEKPSGTSSL..SMGNiARqqVTGMqgvVQSLAIGTPG
 1022- 1094 (83.42/40.59)	ISASPLLQ.EFTSPD........gsvlNPLITT......SgkPSAtelPIDRLIRAVKSISPQALSSAvsDIGS.....VVSM...VDRIAGSAPG
 1231- 1289 (58.80/23.00)	VSLSPALKaHLSSTQmsPIQPLR......LLVPcsypngS..PSL....LDKVPVEISKENED.LSSK..AM...AR...................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.38|      11|     109|       1|      11|       3
---------------------------------------------------------------------------
    1-   11 (24.58/16.06)	MDNNNWRPSLP
   17-   27 (23.80/15.29)	MDSGDWRTQLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32212 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASGQVTGSLLPPQNVVDQQRQLYQTQRTLPEMPSSSLDSTAQTESANGGDWQEE
2) IIGFLNMHRPRKPVQQGQLPQSQMQQPMQQPQSQTVQEQSHDNQTNPQMQSMSMQGAGPRAQQSSLPNMQNNVLSSRSGVSAPQQNIPSSIPASSLESGQGNALNNSQQVPMGSMQQNTSQQVNYSSASAQSGLSALQSNINQPQLSSSLLQHQHMKQQQDQQMTQQIKQQFQHRQMQQQQLQARQQQQQQQLQARQQAAQLQQMNDMNDLTSRQGMNVSRGMFQQHSLQGQRATYPLQQLKPGAVSSPQLLQGASPQMSQQHLSPQVDQKNLSTVNKMGTPLQPANSPFVVPSPSTPLAPSPMQVDSEKPSGTSSLSMGNIARQ
3) MDNNNWRPSLPNGEPAMDSGDWRTQLPPDSRQKIVNKIMETL
4) RKISMKMLTMETKSQNAAGSSSSIPAANNGTSMDSIPTNQGIHIPGSLPTNQSQAPQPLLSQTMQNNTASGMTGSTALPSSMPPVSSITNNNVASVVNQNTNMQNVAGMLQDSSGQHGLSSNMFSGSQRQMLGRQHAMSSQQQQQPQNTQYLYQQQLQQQLLKQNMQSGNVPNPNSLLPSHMQQQQQQQQNVLQPNQLHSSQQPGVPTSATQPSTVNSAPLQGLHTNQQSSPQLSAQQTTQSMLRQHQSSMLRPHPQSQQTSGIHQQQTSLPQQSISPLQQQQTQIMRQQVANGTGIQQKQMMGQHVVGDMQQQHQQRLINQQNNIMNIQQQQSQQQPQQQQKQQPPAQQQLMAQQNSLQGTHQQPLGTQSNVVGLQQPQQQMLNSQVGNSSLQNNQHQVHMLSQSTGGLQRTHQAGHGLFPSQGQQSQNQPSQQQMMPQLQSHHQQLGLQQQPNLLQQDVQQR
546
679
1
80
599
1003
42
543










Molecular Recognition Features






MoRF SequenceStartStop




NANANA