<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32211

Description Uncharacterized protein
SequenceMDQSQRAVAATPSSSSRSYQFHPARAAIIDLFNLYLGRGSRQNPDESHRDHPNKSQKRVHAPNRDLPPRNEQFILDFEQLQSQFNDPEQLRTITESVLISLVVQCSNHAPRAEFLLFALRTLCRISLINWDTFLPSLLSSVSAAEASISQGAQAAAAAAAAAGSSATSSQSLVPVSANNIPSSSSYHSTNPTSLLPSAHGIGSPSASGNELGSVTTFAQAKSLENGQQIARASQTVRENAMRNNQRIRAAAINSLRQLSCKIILIGVEFNLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSARKSWRSEKTLAEWLRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRDAMAMHMLMLDQHLHCPTFGTHRIMSQTAANVSVEAVPHFRHSPITYPSVLGEPLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSSQAGPIPGAVFTSEMICEAIIDRIVELLKLTNSGNAYANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVSRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNTDPKKVETTRKILSFHREDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTSTRAYLNNEQLLKGKQIDEWWRSKGERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAELPGLQPNDRVMMTQEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADADHLVYLQTMLEQILATSQHTWSEKTLRHFPSLIRDTLIGRVDKRGLSIQAWQQAETTVINQCTQLLSPSAEPAYVVTYLGHSFPQHRQYLCAGACLLMQGHADNINSANLARVLREVSPEEVTANIYTLVDVLLHHIHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFLLALIDRDDDPHALIIAMNLLRTPDLLLRIKNYCQNRGSPEHWLVTQVFKRNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVVYRLIENNAMEQADNLLLQHSHFLAYHPLRFTFVRDILAYFYGHLPGKLVLRMLKVLDLSKIPFSESFPQYISPAGAAVCPPLDYFATLLLNLVNNVIPPLSSSSNCSSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYLEASRVIRETWWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLDGTNAIIKNLRPVTSVAMLRVVFRIMGPLLPRLANTHTLFNKTLTLLLTALVDVFGKNAQTTAPVEASQIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILVLIGRAADSLRPDVQHLLAHLKTDPNSSIYAAAHQNTAKTNTS
Length1625
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.08
Grand average of hydropathy-0.058
Instability index44.18
Isoelectric point7.19
Molecular weight181072.74
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32211
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     344.36|      98|     167|       3|     131|       1
---------------------------------------------------------------------------
    3-  110 (152.05/132.18)	QSQRAVAAT..PSSSSRSYqFHPARA.AIIDLFNLY....LGRGSrQNPDESH............RDHPNKSQ.KRVHAPNRDLPPRNEQFILDfeqLQSQFNDPEQLrtiteSVLISLVVQCSNHAP
  170-  273 (132.42/111.59)	QSLVPVSANniPSSSS....YHSTNP.T..SLLPSA....HGIGS...PSASGnelgsvttfaqaKSLENGQQiARASQTVRENAMRNNQRI.....RAAAINSLRQL.....SCKIILIGVEFNLKP
 1239- 1301 (59.89/28.73)	...........PLSSSSNC...SSRSgSMADILNSSarppHG....KTPGTSQ............PGPANASEgQKAFYQIQD.PGTYTQLVLE..................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.81|      11|     167|    1049|    1059|       2
---------------------------------------------------------------------------
 1049- 1059 (20.43/11.71)	PLDIF...LLALID
 1221- 1234 (16.38/ 7.89)	PLDYFatlLLNLVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     169.70|      56|     393|     737|     801|       7
---------------------------------------------------------------------------
  737-  801 (73.63/67.13)	QVVPSIAMVeTYtRllLISPHSMFRSHfSQLAQRNASLLSKPGVTLLVLEILNYrllpLY.RYQGK
 1131- 1187 (96.07/55.70)	RLLPVIPLV.VY.R..LIENNAMEQAD.NLLLQHSHFLAYHPLRFTFVRDILAY....FYgHLPGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.28|      26|     548|     389|     414|      10
---------------------------------------------------------------------------
  389-  414 (47.02/31.59)	RIMSQTAANVSVE.AVPHFRHSPITYP
  426-  452 (43.25/28.42)	LAMSIPKGSLDWErAVRCIRHAIRTTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.33|      28|     322|     510|     539|      11
---------------------------------------------------------------------------
  510-  539 (49.73/44.09)	CWQEWLVFSDifFFLIK...SGCTDFVDFIDKL
  833-  863 (44.60/31.65)	CMNLILSLRD..FFSVKregKGPTEFTETLNRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.74|      18|     164|     912|     931|      13
---------------------------------------------------------------------------
  912-  931 (24.40/23.95)	LIR..DTLIgRV....DKRGlSIQAW
 1073- 1096 (24.33/13.15)	LLRtpDLLL.RIknycQNRG.SPEHW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32211 with Med23 domain of Kingdom Viridiplantae
Unable to open file!