<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32210

Description Uncharacterized protein
SequenceMANNPPQSSGTQFRPMVPGQQGQHFVPAVSQPFHPFGHVPPNVQSQPPQFSQPIQQQQLFPVRPGQPGHITSSSQAVSVPYIHTNNILTSGSTQQQPNAPPMTGFATSGPPFSSSYSFVPSSYPQQQPPSLVQPNSQMHVAGVPPAASTWPVPVNQSTSLVSPVQQTGQQTPVPLSTDPGSSTPQSASDWQEHTSADGRKYYYNKQTKQSSWEKPLELMTPLERADASTVWKEFTTADGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKRSLSEAGSTPLSHNAASSSDLAVSNATSVVPSTSSTLPGHSSSPIQAGLAVPVTRPPSIAPVTPTSAAATDTEATAMKLDNLPSRSTDDLNNGATAQNNEADNKEMLVNGKANLSPAGDKANVEEPMVYATKQEAKAAFKSLLESVNVHSDWTWEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVKMLEECEELSSSMKWSKAMTLFENDERFKAVDRSRDREDLFDNYIVELERKEREKAVEVHRQRMAEYRKFLETCDYIKAGTQWRKIQDRLEDDERCSCLEKIDRLIGFEEYILELEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASNLSGSTPKDLFEDVTEELEKQYHEDKSRVKDAMKSRKISMVSSWLFEDFKSAISEDLIPQPISDINLKLIYDDLVERMKEKEEKEARKLQRLAEEFTNLLRTLKEITAASNWEDTKALIEESQEYRSIGDESVSKGLFEEYTTSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKERREKEREREKERGKERSKREESDGEAAVEASEGHKEEKRKGKDRDRKHRRRHHNSDEDVSSDRDDREESKKSSRKHGNDRKKTRKHAYSPESDGENRHKRLKKDQREGSRRSGYDELEDGEVGEDGEIRH
Length966
PositionUnknown
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.06
Grand average of hydropathy-1.135
Instability index59.03
Isoelectric point6.19
Molecular weight110460.20
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32210
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     497.58|      65|      65|     481|     545|       1
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  414-  474 (71.44/35.92)	..........LLES...V.NVHSDWTWEQTLKEIVH........DKRYG.AL.R...TL...GERKQ.....AFNEYLGQ..R.KKVE.AEERRRRQKKA
  477-  544 (95.37/50.50)	E......fvkMLEE...CEELSSSMKWSKAMTLFEN........DERFK.AV.D...RS...RDRED.....LFDNYIVELER.KERE.KAVEVHRQRMA
  545-  612 (79.06/40.57)	E......yrkFLET...CDYIKAGTQWRKIQDRLED........DERCS.CL.E...KI....DRLI.....GFEEYILELEK.EEEElKRVEKEHVRRA
  613-  690 (57.33/27.33)	ErknrdafrtLLEEhvaAGILTAKTYWLDYCIELKD........LPQYQ.AV.AsnlSG...STPKD.....LFEDVTEELEK.QYHE.DKSRV.KDAM.
  693-  750 (37.55/15.28)	..................RKISMVSSW.....LFED...........FKsAI.S...EDlipQPISDinlklIYDDLVERMKE.KEEK.EARKL..QRLA
  752-  815 (67.36/33.44)	E......ftnLLRT...LKEITAASNWEDTKALIEE........SQEYR.SIgD...ES...VSK.G.....LFEEYTTSLQE.KAKE.K....ERKRDE
  816-  864 (36.59/14.69)	E...................................kvrkekerDEKEK.RK.D...KD...KERRE.......KEREREKERgKERS.KREESDGEAAV
  865-  912 (52.88/24.61)	E.........ASE..................GHKEE........KRKGK.DR.D...RK...HRRRH.....HNSDEDVSSDR.DDRE.ESKKSSRKH..
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.53|      37|      39|     190|     226|       2
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  190-  226 (72.57/44.84)	WQEHTSADGRKYYYNKQTKQSSWEKPLELMTPLERAD
  231-  267 (69.97/42.98)	WKEFTTADGKKYYYNKVTKESKWTIPEDLKLAREQAQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     137.20|      17|      30|      31|      47|       3
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   31-   47 (34.61/19.95)	QP...FH.PF..GHVPPN...V.QSQP
   57-   74 (20.40/ 8.87)	QQ...LF.PVrpGQ.PGH...I.TSSS
   75-   92 (18.81/ 7.63)	QA...VSvPY..IHTNNI...L.TSGS
   93-  110 (20.81/ 9.19)	TQ...QQ.P....NAPPMtgfA.TSGP
  111-  128 (20.08/ 8.62)	PF...SS.SY..SFVPSS...YpQQQP
  133-  151 (22.50/10.51)	QPnsqMH.VA..G.VPPA...A.STWP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     108.18|      30|     107|     160|     189|       4
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  152-  167 (20.80/ 7.86)	............VPVN........QS....TSLVSPVQQT
  168-  189 (32.56/16.61)	GQ.QTP......VPLSTDPGSSTPQSA...SD........
  282-  308 (23.29/ 9.71)	.............PLSHNAASSSDLAVsnaTSVVPSTSST
  311-  343 (31.53/15.84)	GHsSSPiqaglaVPV.TRPPSIAPVTP...T...SAAATD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.25|      18|      24|     914|     931|       5
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  914-  931 (32.36/19.55)	NDRKKTRKHAYSPESDGE
  940-  957 (31.90/19.15)	DQREGSRRSGYDELEDGE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.67|      24|      34|     353|     376|       6
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  353-  376 (40.45/24.15)	NLPSRSTDDL.NNG...........ATAQNNEADNK
  377-  412 (26.22/13.28)	EMLVNGKANLsPAGdkanveepmvyATKQEAKAAFK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32210 with Med35 domain of Kingdom Viridiplantae
Unable to open file!