<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32202

Description Uncharacterized protein
SequenceMLKIYIIKGPNRLLISESPTTAHLFPLPSVFFPPSRLSFFAFSLTKMRPPLTGGRGGGGFRGGRDGGGRGFGGGRGFGGGRGDRGRGGPRGRGRGDRGRGRGPARGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDVVGPEGCVYAVEFSPRSGRDLVNMAKKRTNVVPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARIVALNASFFLKTGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKKQKPAST
Length353
PositionUnknown
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.08
Grand average of hydropathy-0.293
Instability index35.22
Isoelectric point10.24
Molecular weight37923.20
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:InterPro

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32202
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.13|      18|      18|      74|      91|       1
---------------------------------------------------------------------------
   54-   70 (37.76/11.18)	G.RGGGGFRGGRD.GGGRG
   74-   91 (41.15/12.69)	G.RGFGGGRGDRGRGGPRG
   95-  110 (28.22/ 6.93)	GdR..GRGRGP.ARGGMKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.37|      58|     159|     120|     180|       2
---------------------------------------------------------------------------
  120-  180 (89.29/74.05)	RHAGVFIAKGKEDALvtKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKlAAAILGG
  284-  341 (100.09/71.59)	KTGGHFVISIKANCI..DSTVPAEAVFQSEVKKLQQEQFKPAEQVTLEPFERD.HACVVGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32202 with Med36 domain of Kingdom Viridiplantae
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