<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32201

Description Uncharacterized protein (Fragment)
SequenceMAVSADYQVNFPESGDLYSILAAEGIEFLLSHSGEVPLEYIDGKTICLFFSANWCRPCKDFTPELVKLYENLQNRGEELEIIFVSFDHDMTLFYEHFWCMPWLAVPFNLSLLNKLRDKYRISRIPSLVPLYSDDVSVAEDVIGLVEDYGPEAFPFTKKRLEELKAIDESKRVGGQLEKLLTHESRNYVVSRNGSKVPVSKLVGKTIGLYFGAHWCPPFRSFTSQLIDVYNELATTEKGSFEVILVSTDRDSREFNINMTNMPWLAIPYEDRTRQDLCRIFNIKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFPFTESRIVELKACLKKEGDSFPRKVKDKKHEHELKLDMAKAYVCDFCKKQGRFWAFSCYACDYDLHPTCVEEQEALRDRDGGFGTDGLVAVAIDRDKNSQTALKWAVDNLLQKGQTVVLVHVKPRGSSLSSNPSINSNSSNPEGSYKQLFLPFRCLCSRKDIQCKDVLLEESDVAKALVEYANQVVIEVLVVGSSSKGGFLRFNKPTDIPGTITKSAPDFCTVYVITKGKLSTKKTASRAAPSVSPLRIQLQQTSLKPHPPLPSPATTNTRAERQSFESQHRRSPYNRRGLTGRSYGDLSIPDSDISFNSSGRPSIERSSLSLYDNQDPNRTPPRLSNFSDVDYGSFESMTFGRRSMDISSPTAFSTGSFENERFSSASQGMDDVEAEMRRLKLELKQTMEMYSTACKEALTAKHKATELQRWKLEEERKFEEAKIAEEAALAIAEKEKAKSKAAMEAAEAAQRIAEIESKKRVNAEMKALKESEARTKAVNALANSEVRYRKYSIEEIEDATEFFDEKYKIGEGSYGPVYKCYLDHTPVAVKALRPDAAQGRSQFQQEVEVLSSMRHPNMVLLLGACPECGCLVYEFMANGSLEDRLFRQGDSPPLSWQTRFRIAAEIGTVLLFLHQTKPEPLVHRDLKPANILLDRNFVSKVADVGLARLVPPSVANTVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITAKPPMGLTHYVERALEKGNLKDLLDPAVSDWPVEDTTEFAKLALKCAEIRRKDRPDLSKVILPELNRLRVLAEEST
Length1104
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.09
Grand average of hydropathy-0.385
Instability index47.78
Isoelectric point6.29
Molecular weight124388.39
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32201
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.19|      10|      46|      48|      57|       1
---------------------------------------------------------------------------
   48-   57 (23.38/10.85)	LFFSANWCRP
   92-  101 (24.14/11.40)	LFYEHFWCMP
  208-  217 (24.67/11.78)	LYFGAHWCPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     402.45|     128|     158|      15|     165|       2
---------------------------------------------------------------------------
   15-  165 (205.33/160.13)	GDLYSILAAEGIEFLLSHSG.EVPLEYIDGKTIClffsanwcrpCKDFTPELVKLYENL..QNRGeELEIIFVSFDHDmtlfyehfwcmpWLAVPFNLSLLNKLRDKYRISRIPSLVPLYSDDVSVAEDVIGLVEDYGPEAFPFTKKRLEELKA
  174-  326 (197.13/145.32)	GQLEKLLTHESRNYVVSRNGsKVPVSKLVGKTIGlyfgahwcppFRSFTSQLIDVYNELatTEKG.SFEVILVSTDRDsrefninmtnmpWLAIPYEDRTRQDLCRIFNIKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFPFTESRIVELKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.85|      20|      20|     753|     772|       3
---------------------------------------------------------------------------
  763-  783 (25.84/15.52)	KAKSKAAMEA.......aEAAQRIAEIE
  785-  812 (20.43/10.76)	KKRVNAEMKAlkeseartKAVNALANSE
  813-  834 (23.58/13.54)	VRYRKYSIEE......ieDATEFFDEKY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.84|      12|      21|     659|     670|       4
---------------------------------------------------------------------------
  659-  670 (24.58/14.01)	GSFESMTFGRRS
  682-  693 (20.26/10.25)	GSFENERFSSAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.29|      30|      42|     572|     602|       6
---------------------------------------------------------------------------
  572-  602 (50.36/33.47)	PHPPLPSPATTNTRAERQSFESQHRRSPyNR
  616-  645 (51.93/29.61)	PDSDISFNSSGRPSIERSSLSLYDNQDP.NR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     177.63|      56|     380|     457|     518|       7
---------------------------------------------------------------------------
  457-  518 (84.06/69.07)	EGSYKQLflpFRCLCSRKDIQCKDVlleESDVAKALVEYANQVVI........EVLVVGSSSKGGFLRFN
  838-  901 (93.57/60.32)	EGSYGPV...YKCYLDHTPVAVKAL...RPDAAQGRSQFQQEVEVlssmrhpnMVLLLGACPECGCLVYE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32201 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRIQLQQTSLKPHPPLPSPATTNTRAERQSFESQHRRSPYNRRGLTGRSYGDL
561
613










Molecular Recognition Features






MoRF SequenceStartStop




NANANA