<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32196

Description Uncharacterized protein
SequenceMEEKKAARALSEHLSLPPPPSPVIAVAINGKKKSKYVAFWALEKFIPEGFSDFKLLYVRPPVTYIPTPMGNAISVSELRDDVVSAYRQEVDWHTNEMLRPYKKMFERRKVQVEILVLESHEPVAAIAEEIAGTGVTKLVIGMSLRGFFSRKIDMSSLIATAVPRFCTVYVVSKGKLASVRPSDSDASGSIRFERTERSSSTSGSTDSPRLPSEYQDFLSFVSEAQSRVSPMSPAPKHSMSTSAVIQMETSSSEADQEEVSRGRGMEIVQSGNEWTKNKDESFSASFPMGTEAYHAMSWASKWRDHENRREIMSSSSSNNHDLANMDWGAVVPENYSFVSHCASNMSDGLLSVHSVTDNQVNLSFEIEKLRAELKHVQEMYAMAQTETVDASNKLTELNQRRFEESEKLVELKEMEEVAKDTASKEKQRYEEAMKEAEKVKELMMKEALHRREAEIKAERDAREKDKLQASLVSPGIQYQHYTWEEIAAATSDFAENLKIGIGAYGTVYKCNLHHTTGAVKVLHAGETQLSKQFDQELEILSKIRHPHLVLLLGACPERGCLVYEYMDNGSLDDRLMLVNDTPPIPWFERFRIALEVASALVFLHKSKPRPIIHRDLKPGNILLDHNFVSKLGDVGLSTMVNQDDASSKLTVFKKTSPVGTLCYIDPEYQRTGIISPKSDVYSLGVVILQLITAKPAIAITHMVEEAIGDDAEFMALLDVKAGSWPISETRELAALGLCCTELRRRDRPDLKDQIIPALERLRKVVDKAQNSLSRTPSGPPSHFICPLVKGVMNEPCVAADGYTYDREAIEEWLREKDTSPVTNLPLPNKSLLANYTLYSAIMEWKSNKL
Length849
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.07
Grand average of hydropathy-0.382
Instability index44.38
Isoelectric point5.86
Molecular weight95180.35
Publications
PubMed=23749190

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32196
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.39|      27|      28|     313|     340|       1
---------------------------------------------------------------------------
  198-  222 (32.47/14.03)	SSSTSGSTD.SPRL......PS..EYqdflSFVS
  313-  339 (51.32/28.19)	SSSSSNNHD.LANMDWGAVVPE..NY....SFVS
  342-  364 (14.60/ 6.37)	...ASNMSDgL..LSVHSVTDNqvNL....SF..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.17|      29|     209|     243|     293|       2
---------------------------------------------------------------------------
  247-  282 (38.94/50.45)	METSSSEADQEEVSRgrgmEIVqsgNEWTKNKDESF
  792-  820 (53.23/22.89)	MNEPCVAADGYTYDR....EAI...EEWLREKDTSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.03|      24|     757|       5|      30|       3
---------------------------------------------------------------------------
    5-   30 (37.88/29.29)	KAARALSEHLSlpPPPSPVIAVAING
  767-  790 (46.16/28.76)	KAQNSLSRTPS..GPPSHFICPLVKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.33|      26|      28|     386|     411|       4
---------------------------------------------------------------------------
  386-  411 (40.97/29.01)	ETV..DASNKLTELNQRRFEESEKLVEL
  415-  442 (36.36/24.88)	EEVakDTASKEKQRYEEAMKEAEKVKEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.74|      18|      32|     465|     482|       6
---------------------------------------------------------------------------
  465-  482 (31.83/22.45)	DKLQASLVSPGIQYQ...HYT
  495-  515 (26.91/17.88)	ENLKIGIGAYGTVYKcnlHHT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.91|      32|     541|     104|     135|       7
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  104-  135 (50.42/41.48)	MFERRKVQVEILVLESHEPVAA...I...AEEIAGTGV
  639-  673 (44.17/35.28)	MVNQDDASSKLTVFKKTSPVGTlcyI...DPEYQRTGI
  680-  708 (26.32/17.59)	VYS...LGVVILQLITAKPAIA...IthmVEEAIG...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32196 with Med32 domain of Kingdom Viridiplantae
Unable to open file!