<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32193

Description Uncharacterized protein
SequenceMVIPGRRTVWDGVIQLTKMSQENCIDPRLWASQLSSNLNFFAVEFPSTELAEVIVSYICWDNNVPILWKFLERAMALNLVSPLVVLSLLSHRVVPNRNTQLAAYRIYLELLKRYMFTIKDHITGPHYHKVMISVASILRLSELFDLETNEPGVILVEFVFEVVSQLLDATLSDEGLLELSQDSSSLSQKMEIDAPERYNGKTGSLEKLQSLNTIMVVEMIAEFLKNTVVSRLLYLVSSNRASNWHEFVQKVQLLGENSSALKNSKILNPGDLLKLISNKRFRYSYDCKVTSSRKSNAIVDFGSLSSFAGLCHGASISSLWLPLDLVFEDAMDGYQVNPTSAIEIITGLAKTLKEINGSTWHDTFLGLWIAALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVANLIEEGIYVSVTEKLQDDLVTSLQVLGDFPGLLAPPKCVVSAANKAATKAILFLAGANISDVINMKDMPMNCSGNMRHLIVEACIARNILDTSAYSWPGYVNGQFNQIPQSLPNELPCWSSFVKGAPLNAAMVNALASVPASSLAELEKLYEVAVKGSDDEKISAATVLCGASLTRGWNIQEHTVEFLTRLLSPPVSADYSKAESHLITYACMLNVVIVGIGSVDSIQIFSLHGMVPQLACSLMPICEEFGSYTPSISWTLPTGEKISAYSVFSNAFTLLLKLWRFNHPPIEHGVGDVPTVGSQLTPEHLLLVRNSYLISSETLNRDRNRKRLSEVARSASCEPVFVDSFPKLKIWYRQHQRCIAATLSGLTHGSPVHQTVEALLSMMFRKVRGSHTLNPVNSGTSSSSGAASEDSNPRPEFPAWDILKAVPYVVDAALTACTHGKLSPRDLATGLKDLADFLPASLATIVSYFSAEVSRGVWKPVFMNGVDWPSPATNLSNVEEFIKKILATTGVDIPSLAPGGSSPATLPLPLAAFVSLTITYKIDKASERFLNLAGPALECLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNQDAVNQLLRNCFSATLGLNAAPMSNDGGVGALLGHGFGSHFYGGISPVAPGILYLRMYRALRETVSVTEEIFSILIHSVEDIAQNRLSMEKLERLKTVKNGTRYGQSSLATAMTQVKLAASLSASLVWLTGGLGVVHLLIKETIPSWFLSTDKSDRKQGPSDLVAELRGHALAYFVVLCGAFAWGVDSRSSASKRRRQAILGSHLEFIASALDGKISVGCETATWRTYVSGVVSLMVSCLPLWVAEIDTEVLKSLSNGLRQWGKDELAIVLLSLGGLRTMDYAANFIIHLRS
Length1301
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.08
Grand average of hydropathy0.163
Instability index41.53
Isoelectric point6.64
Molecular weight142469.94
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32193
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.87|      65|     162|    1046|    1119|       1
---------------------------------------------------------------------------
 1046- 1119 (100.62/96.25)	FGSHFYgGISPVAPGILYLRMYRAL.RETVS.VTEEIFSILIHSVEDIaqnrlsmeKLERLKTVKNGTR.YGQSSLA
 1210- 1277 (99.25/72.33)	LGSHLE.FIASALDGKISVGCETATwRTYVSgVVSLMVSCLPLWVAEI........DTEVLKSLSNGLRqWGKDELA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.70|      25|     162|     437|     464|       2
---------------------------------------------------------------------------
  437-  464 (36.54/35.42)	LLAPPkcvVSA.ANKAATKAILFLAGANI
  596-  621 (41.16/29.17)	LLSPP...VSAdYSKAESHLITYACMLNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     221.70|      68|      71|     686|     756|       7
---------------------------------------------------------------------------
  686-  756 (110.95/81.20)	LKLWRFNHPP.IEHGVGDVpTVGSQL..TPEHLLLVRNSYLISSETLNRDRNRKRLSEVARSASCEPvfVDSFP
  758-  828 (110.75/70.03)	LKIWYRQHQRcIAATLSGL.THGSPVhqTVEALLSMMFRKVRGSHTLNPVNSGTSSSSGAASEDSNP..RPEFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.50|      17|     161|     839|     872|       9
---------------------------------------------------------------------------
  419-  435 (31.40/ 9.62)	KL.QDDLVTSLQVLGDF.P
  851-  869 (23.10/17.42)	KLsPRDLATGLKDLADFlP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.66|      13|     128|    1005|    1017|      14
---------------------------------------------------------------------------
 1005- 1017 (22.06/12.64)	VFLHNQDAVNQLL
 1030- 1042 (22.60/13.12)	APMSNDGGVGALL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32193 with Med33 domain of Kingdom Viridiplantae
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