<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32192

Description Uncharacterized protein
SequenceMANNPQYPGIQPFQHPNASSLELPRGYDPSMNFQFRPTIQAPHSEQVTRLSSHNFQSVGRGGTVMNIGYPPQSYAPQLLHHSLERPSQLNKVQPVPLGPPTLISQPNVSISSGASMPPPYVQTPDISMPGFGGPRALFSYPIATSYEGSRAPTQVTGSSSHNQAQQRASISQTTAQSSIMNPTFEQPKAAFFQPIPSQELLTDWVEHTSADGRKYFFNKRTKRSTWEKPVELMTLFERADAGTDWKEHSSPDGRKYYYNKVTKQSTWKMPEEMKTAREQAEKASVQGPQPGGIIDASKVLSRSDTASTEAPTGLPSKTSTSDTSEKLALSSDWKQPASVPGSSSPVENVDGAQMIADKTSLLCDIAETDGPSVTVTKTSAATLVKKDEISVGITGDSDDISAKTTNQGSGTAPKESQKHMVESERLESQPEEKQIHQDNFSSNNKLEPGDVFKSLLKSANVGPDWTWEQALREIINDRRYGALRTLGERKQAFNEFLLQMKRSAEEERLARQRKRYEEFKRMLEECVELAPSMRWSKAVTMFEDDERFKALEREKDRRNIFEDHINELKEKERVKALEDRKRNIIEYRRFLESCNFIKSNSQWRKVQDRLEVDERCSCLEKIDQLEIFQEYLRDLEREEEERQKIQKEELKKAERKHRDEFRGLIDEHIATGELTAKTSWRDYLMKVRDLPVYSAITSNSSGATPKDLFEDALEDLKRKYHDLKSQIKDVLKFRKVTLYGGSTFDEFKVSISEDISVSSISDVKLKVVFDDLLERVKEKEEKEARKQTRQTEKLVDMLRFFKDITASSSWEESKHLVEGSERCRTIGDESFRKHTFEDYVSHLKEQSKRMKQHKKVPEDVRDEHDKGKDKYGREKDRVRERDSDDHHKKGAADNHNHDMNEPHGRERRRSGRDSYNRHRERHTSVKESETDHLKESHKAGGGHKKSREQRGLVPEAEDEGREKRRRKEEESEKTKVEELEDGECGRY
Length987
PositionUnknown
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.07
Grand average of hydropathy-1.079
Instability index53.94
Isoelectric point6.70
Molecular weight113310.85
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32192
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     189.50|      39|      39|     202|     240|       1
---------------------------------------------------------------------------
  156-  188 (43.71/23.95)	TGSSSHNQAQQRASISQTTAQSS.......IMNpTFEQPK
  202-  240 (72.94/44.84)	TDWVEHTSADGRKYFFNKRTKRSTWEKPVELMT.LFERAD
  243-  281 (72.85/44.78)	TDWKEHSSPDGRKYYYNKVTKQSTWKMPEEMKT.AREQAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     205.05|      50|      54|     861|     913|       2
---------------------------------------------------------------------------
  414-  439 (24.97/ 8.02)	..KESQKHMVESER...L...ESQ...PEEKQIHQDN..............................................
  774-  829 (38.01/17.79)	............ER...VKEKEEK...EARKQTRQTEKLVDM......LRffkditasssweeskhlVEGSERCRTiG...DE
  842-  863 (26.47/11.44)	HLKEQSKRMKQHKK...VPE..........................................................dvrDE
  864-  911 (80.56/49.35)	HDKGKDKYGREKDR...VRERDSD...DHHKKGAADNHNHDM......NE.................PHGRERRRS.G.....
  915-  965 (35.04/14.93)	.......YNRHRERhtsVKESETDhlkESHKAGGGHKKSREQrglvpeAE.................DEGREKRR........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     332.46|      64|      65|     463|     526|       3
---------------------------------------------------------------------------
  458-  525 (97.49/45.28)	S...anvgPDWTWEQALREIINDRRYGAL..RTLG.ERKQAFNEFLLQMKRSAEE......ERLA..R.QRK..............R.YEEFKRMLEE
  526-  593 (82.72/37.49)	C...velaPSMRWSKAVTMFEDDERFKAL..EREK.DRRNIFEDHINELK...EK......ERVKalE.DRK..............RnIIEYRRFLES
  594-  667 (84.47/38.41)	C...nfikSNSQWRKVQDRLEVDERCSCL..EKI..DQLEIFQEYLRDLEREEEErqkiqkEELK..KaERK..............H.RDEFRGLIDE
  668-  753 (67.78/29.61)	HiatgeltAKTSWRDYLMKVRDLPVYSAItsNSSGaTPKDLFEDALEDLKRKYHD........LK..S.QIKdvlkfrkvtlyggsT.FDEFKVSISE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.88|      29|      32|       8|      37|       4
---------------------------------------------------------------------------
    8-   37 (52.35/41.55)	PGIQ.PF..QH..PNASSLE....LP...RGyDPSMNFQFRP
   39-   71 (31.39/18.14)	..IQaPHseQV..TRLSSHN....FQsvgRG.GTVMNIGYPP
   74-  102 (24.15/12.08)	YAPQ.LL..HHslERPSQLNkvqpVP...LG.PPTL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      58.18|      15|      16|     365|     379|       5
---------------------------------------------------------------------------
  306-  319 (15.64/ 6.16)	.ASTEAPTGLPSKTS
  365-  379 (25.34/14.59)	IAETDGPSVTVTKTS
  383-  397 (17.20/ 7.51)	LVKKDEISVGITGDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.59|      15|      16|     103|     117|       7
---------------------------------------------------------------------------
  103-  117 (24.87/12.18)	ISQPNVSISSGASMP
  121-  134 (25.53/12.67)	VQTPDISM.PGFGGP
  138-  152 (25.20/12.43)	FSYPIATSYEGSRAP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32192 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APQLLHHSLERPSQLNKVQPVPLGPPTLISQPNVSISSGASMPPPYVQTPDISM
2) EDYVSHLKEQSKRMKQHKKVPEDVRDEHDKGKDKYGREKDRVRERDSDDHHKKGAADNHNHDMNEPHGRERRRSGRDSYNRHRERHTSVKESETDHLKESHKAGGGHKKSREQRGLVPEAEDEGREKRRRKEEESEKTKVEELEDGECGRY
3) GITGDSDDISAKTTNQGSGTAPKESQKHMVESERLESQPEEKQIHQDNFSSN
4) GSRAPTQVTGSSSHNQAQQRASISQTTAQSSIMNPTFEQPKAAFF
5) MANNPQYPGIQPFQHPNASSLELPRGYDPSMNFQFRPTIQAPHSEQVTRLSSHNFQSVGRGGTVMNI
6) WKMPEEMKTAREQAEKASVQGPQPGGIIDASKVLSRSDTASTEAPTGLPSKTSTSDTSEKLALSSDWKQPASVPGSSSPVENVDGAQMIADKTSLLCDIAETDGPSVTVTKTSAA
75
837
392
148
1
267
128
987
443
192
67
381










Molecular Recognition Features






MoRF SequenceStartStop




NANANA