<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32191

Description Uncharacterized protein (Fragment)
SequenceSTNITRGLLLLLLQKPISSSKSFFNFIFMVVMTNKFFESIGGAPSYSSIAVAVKGSVGDAVGGTASRRALRWTIENLLPEIDRLVLVHVMPTVTTIPSPSGSKIPVEELEESVVSMYKRDLRKEYEQVFVPFKKICKSNKVETLLLEHNDPAKALLKYMADTEVECLVIGSCSSNFLTRKKGQELPLTVLGEAPEACEIYVVCKDRILTKSTNQFTADSSSSFRIPEGAEAYTESFSRTRSDKTSLSASSIASSGRKRIGRPASLPHSHPTSRVFSDAQSSTDVGLVNDEHTRSILRHSTVSSIKKQLDPRPHIKTPKSDVKSEVEQLRKEVQTTLSMYKQACEELVHKQTQVQSLSSECIKETEKVITALEKEEMRRKAAAEEKEKHLKAVKEVEEAKSMLAKEFCDRQLAELDALKQSIEKQKVIEQLFLRDGRYRKYTKEEIAAATDNFSSRKIIGEGGYGKVYKCSLDHTPVALKVLKPDSIEKKEEFLKEISVLSQLRHPHVVLLLGACPENGCLVYEYMENGSLDSHITPKKGKPSLSWFIRFRIIYETACGLAFLHSSKPEPIVHRDLKPGNILLDRNFVSKIGDVGLAKLMSEEAPDSVTVYRNSIIAGTLYYMDPEYQRTGTIRPKSDLYAFGIIILQLLTGRHPNGLLFCVEDALKRGCFEDMLDKSVRDWPITETKELARIAVECSQLKCRDRPDLDTQVLPALKQILESANSRLKTEQANARPPTHYYCPILKEIMEDPQIAADGFTYEGKAIKAWMQKHQNVSPVTKHRLKHSDLTPNHTLKSAIQEWRSRSRLDLSTTLGSF
Length816
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.06
Grand average of hydropathy-0.380
Instability index50.94
Isoelectric point8.80
Molecular weight91688.35
Publications
PubMed=23749190

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32191
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.99|      49|      62|     330|     389|       1
---------------------------------------------------------------------------
  330-  384 (75.05/85.01)	KEVQTTLSMY.KQACE.ELVHKQTQVQSLssecikETEKVITALEKEEMR.RKAAAEE
  393-  444 (68.94/49.33)	KEVEEAKSMLaKEFCDrQLAELDALKQSI......EKQKVIEQLFLRDGRyRKYTKEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.65|      31|     147|     482|     538|       3
---------------------------------------------------------------------------
  503-  538 (52.98/69.31)	RHPHVVLLlgaCPEN....GClvYEYMENGSL.DSHITPKK
  652-  687 (52.66/21.69)	RHPNGLLF...CVEDalkrGC..FEDMLDKSVrDWPITETK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32191 with Med32 domain of Kingdom Viridiplantae
Unable to open file!