<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32187

Description Uncharacterized protein
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPTNTVFDAKRLIGRRYSDPSVQADMLHWPFTVKSGPAEKPMITVNYKGEEKQFSAEEISSMVLTKMREIAEAFLGTSVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIASKLDADDKKKIEDAIDQAIEWLDGNQLAEADEFEDKMKELESLCNPIIARMYQGAGPDMGGAGGMDDDAPAGGSGGAGPKIEEVD
Length650
PositionUnknown
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.06
Grand average of hydropathy-0.448
Instability index32.53
Isoelectric point5.04
Molecular weight71222.69
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32187
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.83|      23|      26|      33|      55|       1
---------------------------------------------------------------------------
   13-   31 (27.94/13.87)	..DLG..TTYSCVGVWQHDRVEI
   33-   55 (40.58/22.84)	ANDQGNRTTPSYVAFTDSERLIG
   57-   78 (34.31/18.39)	AAKNQVAMNPTNTVF.DAKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     282.59|      98|     189|     121|     225|       2
---------------------------------------------------------------------------
  121-  225 (139.34/133.02)	EEISSMVLTKMREIAEAFLGTSV..KNAVVTVpAYFNDSQR.....QATKDagVISGLNVMRIINePTaAAIAYGLDKKASSV.GEKNVLIFDLggGTFDVSLLT..IEE..GIFEV
  309-  418 (143.25/106.65)	EELNMDLFRKCMEPVEKCLRDAKmdKNSVHDV.VLVGGSTRipkvqQLLQD..FFNGKELCKSIN.PD.EAVAYGAAVQAAILsGEGNEKVQDL..LLLDVTPLSlgLETagGVMTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.66|      26|      26|     559|     584|       3
---------------------------------------------------------------------------
  559-  584 (39.58/23.98)	IKDEKIASKLDADDK.KKIEDAIDQAI
  587-  613 (38.08/22.81)	LDGNQLAEADEFEDKmKELESLCNPII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.32|      41|      46|     427|     468|       6
---------------------------------------------------------------------------
  427-  468 (64.54/35.96)	PTKKEQIFSTYSDNQPGVLiQVYEGERARTKDNNLL...GKFELS
  474-  517 (63.77/31.94)	PRGVPQITVCFDIDANGIL.NVSAEDKTTGQKNKITitnDKGRLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32187 with Med37 domain of Kingdom Viridiplantae
Unable to open file!