<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32182

Description Uncharacterized protein
SequenceMRERDPIEGPVPRTDTFLCVLLSVTPLAVANIIEEEESQWIDQSSSSPSNQWKDKKGKCRQGLVNSLQQLGDYESLLTPPRSVQSVANQAAAKAVMFVSGSTNGNGSYEDTGMSESPSGCSGNMRHLIVEACITRNLLDTSAYLWPGFVTGGINQVPQGITGDISCWSLVMKGSPLTPSLTNSLITTPASSLAEIEKMYEVATTGSEDEKIAVASILCGASLFRGWSIQEHVIIFIVTLLSPPAPTDISGSYSHLISSAPFLNVLLVGISPIDCVQIFSLHGVVPLLAGALMPICEAFGSGIPNITWTLPTGEVISSHAVFSTAFSLLLRLWRFDHPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLKCFGKSPKDRMARRRFSKMIDISVDPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKANKGGSQSLTPSSGSSSLSTSGVDDSSDQLKLPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKILADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLVSVEQQIEKILAATGVDVPRLPADGISAATLPLPLAALVSLTITYKLDKATERFLVLVGPALDSLAAACPWPCMPIVTSLWTQKVKRWSDFLIFSASRTVFHHNSDAVIQLLRSCFTCTLGLTPTSQLCSYGGVGALLGHGFGSRYSGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIATRDLPAEQAEKLKKTKDGSKYGIGQVSLSLAMTRVKLAASLGASLVWISGGLNLVQALIKETLPSWFISVHGGEEDDLGGMVPMLRGYALAYFAILSSAFAWGIDSSSPASKRRPRVLWLHLDFLVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLEVDVEVIKRLSKSLRQWNEQDLALALLCAGGLGTMGAATELIVETCHQL
Length948
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.07
Grand average of hydropathy0.202
Instability index47.83
Isoelectric point6.13
Molecular weight102186.98
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32182
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     339.54|     111|     158|     470|     583|       1
---------------------------------------------------------------------------
  470-  583 (180.33/111.73)	KL...PAWDILEAA.PF.....................VLDAALTACAHGSLSP.RELATGLKILADFLPAtlGTMVSY..FSSEVTRGLWKPVSmNGTDWPSPAANLVSVEQQIEKILAATGVDVPRLPADGISAATLPLP
  604-  742 (159.21/89.86)	LVlvgPALDSLAAAcPWpcmpivtslwtqkvkrwsdflIFSASRTVFHHNSDAViQLLRSCFTCTLGLTPT..SQLCSYggVGALLGHGFGSRYS.GGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIATRDLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     189.09|      37|      70|     315|     351|       3
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  222-  245 (28.00/12.44)	...............LFRGWSIQEHVIIFIVTLLSPPAP
  253-  288 (40.68/21.46)	..SHLISSAPFlnVLLVGISPIDCVQI.FSLHGVVPLLA
  315-  351 (61.99/36.62)	ISSHAVFSTAF..SLLLRLWRFDHPPLDYVLGDVPPVGP
  388-  424 (58.42/34.08)	ISVDPIFMDSF..PRLKQWYRQHQECMASILSELKTGSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.47|      25|     597|     159|     185|       4
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  159-  185 (37.80/29.98)	GItGDIScWSLVMKGSPLTPSLTNSLI
  759-  783 (41.67/22.86)	GI.GQVS.LSLAMTRVKLAASLGASLV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32182 with Med33 domain of Kingdom Viridiplantae
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