<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32181

Description Uncharacterized protein
SequenceMEGGVGLATTTQPQQPPPPVVEKLNPKLEKELNLESLKTRALSLFKAVSRILEDFDAYGRTNTTPKWQDILGQYSMVNLELFNIVEEVKKVSNAFVVLPKNVNAVNAGILPVMLSSKLLPEMETDDNAKREQLLQGVQSLPIPMQIERLKARMDMIAAACENAEKVLADTRKAYGFGTRQGPSMLPTMDKGQAAKIQEQENMLRAAVNDGAGTRLPPDQRQITTALPPHLADVLIINEAGKIALPGQSNNFNNQGMMQVSGTQFMGRSAASPSGPNFDNTASPLPYSNSPRATGMVNAPSPQQQIQQQQLQQQQRAKLMQMPQHQQQLLAQQQQLRQTSMQGLGQSQIPALHDLHGQSQQKFQTLHGQHQMSYSQPMAAAHQQFQARQLSGGHIQHSMSQGQLNPAMNRHLNQFSGGANSALFTSAQGSPSSQMIPNMSSMQSQTLVPRMQQFGVSGTNPQRSHSSQMLGDQMFNSSGMMQTQQTQTQQPQQQQQQQQQQQGGYGNMQTNQQSLQPNNMMQNAQQRHQNPPQ
Length532
PositionHead
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.04
Grand average of hydropathy-0.728
Instability index55.48
Isoelectric point9.42
Molecular weight58693.59
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32181
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.45|      21|      24|     302|     325|       1
---------------------------------------------------------------------------
  302-  322 (38.62/ 8.52)	QQQIQQQQLQQQQRAKLMQMP
  511-  531 (32.84/10.48)	QQSLQPNNMMQNAQQRHQNPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     150.16|      24|      24|     359|     382|       2
---------------------------------------------------------------------------
  325-  346 (25.02/ 6.44)	Q....QQL..........LAQQ..Q.QLRQTsmqgL.GQS
  347-  369 (30.45/ 9.63)	QIP...AL.........HDLHGqsQ.QKFQT....LHGQH
  370-  396 (33.38/11.34)	QMSYSQPM.........AAAHQqfQaRQLSG....GHIQH
  461-  492 (32.24/10.68)	QRSHSSQMlgdqmfnssGMMQT..Q.QT.QT....QQPQQ
  493-  507 (29.06/ 8.81)	Q....QQ.............QQ..Q.QQ.QG....GYGNM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.26|      41|     114|      32|      73|       3
---------------------------------------------------------------------------
   32-   73 (65.02/47.62)	LNLESLKTRaLSLFKA....VSRILEDF.DAYG.RTNTTPKWQDIL..GQ
  144-  192 (50.24/31.61)	MQIERLKAR.MDMIAAacenAEKVLADTrKAYGfGTRQGPSMLPTMdkGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     143.69|      44|     157|     246|     301|       4
---------------------------------------------------------------------------
  202-  262 (38.54/26.02)	..MLRAAVN.........DGAGTRLP....PDQRQITTALPPhladvliineagkialpgqsnnfnnqgmMQ...VSGT
  263-  301 (59.02/24.70)	QFMGRSAASPSG...PNFDNTASPLPySNSPRATGMVNAPSP.....................................
  421-  458 (46.12/16.76)	ALFTSAQGSPSSqmiPNMSSMQSQ...TLVPR......................................MQqfgVSGT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32181 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LPGQSNNFNNQGMMQVSGTQFMGRSAASPSGPNFDNTASPLPYSNSPRATGMVNAPSPQQQIQQQQLQQQQRAKLMQMPQHQQQLLAQQQQLRQTSMQGLGQSQIPALHDLHGQSQQKFQTLHGQHQMSYSQPMAAAHQQFQARQLSGGHIQHSMSQGQLNPAMNRHLNQFSGGANSALFTSAQGSPSSQMIPNMSSMQSQTLVPRMQQFGVSGTNPQRSHSSQMLGDQMFNSSGMMQTQQTQTQQPQQQQQQQQQQQGGYGNMQTNQQSLQPNNMMQNAQQRHQNPPQ
2) TRQGPSMLPTMDKGQAAKIQEQENMLRAAVNDGAGTRLPPDQRQITTALPP
244
178
532
228










Molecular Recognition Features






MoRF SequenceStartStop




NANANA