<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32180

Description Uncharacterized protein
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGEAAKNQVAANPANTVFDAKRLIGRRYNDATVQSDLRLWPFGLVSSGTADKPLIVVTYKGEEKRFAAEEISSMVLIKMREISEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKQDITGNARALRRMRTACERAKRTLSSTAQTTIEIDSLAGGFDFYAPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSVHEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVDAKNALENYAYNMRNTIRDEKIGEKLPAAEKKKIEDSIEEAIQWLDGNQLAEADEFEDKMKELEGLCNPIIAKMYQGGAGGPGAAAMDEDEAPPASGGAGPKIEEVD
Length650
PositionUnknown
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.06
Grand average of hydropathy-0.412
Instability index38.40
Isoelectric point5.09
Molecular weight71035.49
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32180
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.87|      23|      26|      33|      55|       1
---------------------------------------------------------------------------
   13-   31 (27.98/17.99)	..DLG..TTYSCVGVWQHDRVEI
   33-   55 (40.61/29.51)	ANDQGNRTTPSYVAFTDSERLIG
   57-   78 (33.28/22.82)	AAKNQVAANPANTVF.DAKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.71|      19|      25|     560|     583|       2
---------------------------------------------------------------------------
  560-  583 (21.76/20.69)	IR..DekiGEKLpaAEKKKIEDSIEE
  585-  605 (28.96/13.04)	IQwlD...GNQL..AEADEFEDKMKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.63|      12|      26|     164|     175|       4
---------------------------------------------------------------------------
  164-  175 (19.40/14.79)	KDAGVIAGLNVL
  192-  203 (19.22/14.58)	KKATSVGEKNVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.97|      31|      60|     386|     416|       6
---------------------------------------------------------------------------
  342-  376 (42.51/29.24)	VLVGGSTRipKVQQLLqdFFNGKELCKSINPDEAV
  386-  416 (49.46/35.26)	ILSGEGNE..KVQDLL..LLDVTPLSLGLETAGGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.57|      11|      17|     620|     631|       7
---------------------------------------------------------------------------
  620-  631 (17.40/13.71)	GGAgGPGAAAMD
  640-  650 (21.17/11.19)	GGA.GPKIEEVD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32180 with Med37 domain of Kingdom Viridiplantae
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