<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32176

Description Uncharacterized protein
SequenceMSRSPDKLALPPPSLYTVIVALSGSSKSKNVVTWALEKFAPEGNVGFKLLHIHPMITSVPTPMGNAIPISEVRDDVVTAYRQEILWQSEEMIKPFTKMFMRRKVAVEVLVIESDNTAAAIAEEVTRNSTERLVIGGSSRSFFSRKADMCSAISALMPNFCTVYVVSKGKLSCVRPSDSDGNATIRDDGSERTDSSSGSSGPTSDSTDVMSSGRDSQSRVLSLPVRRLLQLPAIARQASVPMETSSVGSDETRCMSLDAEEAKDVSSINRSSTDTTSRWTPRLRDYEERKEAMSSSSSNREYGNVGSRFSWTGMVIDTTNSRASQQASNMSDPLSEQSYTDNQVNLNFEIEKLRAELRHVQEMYAVAQTETFDASRKLGELNQRRLEEAIKLEELKLKEYESRELAEKEKQNFEKARRDAENMRERAEREIALRREAERKCTRDTKEKEKLEGTLGSPQLQYQHFTWEEIMAATSSFSEELKIGMGAYGAVYKCNLHHTTAAVKVLHSAESSLSRQFQQELEILSKIRHPHLVMLLGACPEKGALVYEYMENGSLEDRLFQVNNSPPLPWFERFRIAWEVAAALVFLHKSKPKPIIHRDLKPANILLDHNFVSKVGDVGLSTMVQVDPLSTKFTIYKQTSPVGTLCYIDPEYQRTGMISSKSDVYSFGMIVLQLLTAKPAIALAHYVESAMDSNEEFLKMLDQKAGNWPIEETRELTALALCCTELRGKDRPDLKDQILPALESLKKVADKARNSLSGVSTQPPTHFICPLLKDVMNEPCVAADGYTYDRRAIEEWLEEHDTSPMTDSPLRSKNLLPNYTLYTAIMEWRSV
Length830
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.07
Grand average of hydropathy-0.461
Instability index52.33
Isoelectric point5.85
Molecular weight93225.71
Publications
PubMed=23749190

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32176
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.96|      27|      29|     257|     284|       1
---------------------------------------------------------------------------
  187-  210 (21.60/ 6.16)	DGSERTDS...SSGSsgptSDSTDVMS.........
  257-  283 (48.33/28.02)	DAEEAKDV...SSIN....RSSTDTTSR..WTPRLR
  286-  315 (30.03/18.86)	..EERKEAmssSSSN....REYGNVGSRfsWTGMVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.82|      23|      23|     396|     418|       2
---------------------------------------------------------------------------
  374-  391 (19.08/ 9.94)	.....SRKLGELNQRRLEEAIKL
  396-  418 (36.98/26.95)	LKEYESRELAEKEKQNFEKARRD
  422-  443 (33.75/23.88)	MRERAEREIALRREAE.RKCTRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.24|      18|      31|     448|     465|       4
---------------------------------------------------------------------------
  448-  465 (32.62/20.53)	EKLEGTLGSPQLQYQ...HFT
  478-  498 (27.62/16.39)	EELKIGMGAYGAVYKcnlHHT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.84|      10|      32|     212|     222|       7
---------------------------------------------------------------------------
  212-  222 (13.23/12.66)	GRDsQSRVLSL
  247-  256 (19.61/13.03)	GSD.ETRCMSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32176 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEKEKQNFEKARRDAENMRERAEREIALRREAER
2) IARQASVPMETSSVGSDETRCMSLDAEEAKDVSSINRSSTDTTSRWTPRLRDYEERKEAMSSSSSNREYG
3) PSDSDGNATIRDDGSERTDSSSGSSGPTSDSTDVMSSGRDSQ
405
233
175
438
302
216










Molecular Recognition Features






MoRF SequenceStartStop




1) KLALPPPSLYTVIV
7
20