<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32159

Description Os07g0229100 protein
SequenceMDAKVDEMSKAYQELVAAAQAILEARRQPGGENTAAMDAAREAFEQRRKLFAVACDDADALVQSARQSIVSDPGRFVDVVTTPDEDSVRSPTRSSAESSSSSGFGALPDEVLRHILLRLPSAAAAARTSLISRRWRNLWSTLLPKLRFPGVTDLARVGAALRLRVAPVRLLRIESSDRAPDKIVAVLHLAAPLLEGKLCFDVITPAAAAAGAAGTGGAIQIPCFEKATEITIRLRGRLGIQLPPSGVFARLTALSLSHCRFDDQGQRDLGDAVSSEGCPSLRELRIRDADVVSNLAIRSESLRLVQLSRLEGIRQLTISAPALTELDLYACLLWGMPMVDIFAPALETLHWVDFFSSSSVRFVEKPNVHRLSVYGMVYGRRNTPGSLQLVQHFTEARDVHLSLVYPSIMDMSCELLVQAVKKLPAVEILSLRLLTIGHTFGPCVYHLLKMSTGIRELKLKLEDHIADGEVPCSSGCVCYEPQAWKKNNISLNFLQKVEINNLSGAERQIYFVKRLLRWTMPELKTITLSFDPLVTVSEKVSRKLLSFSTPGICMEIYLHRNGTRVKYSAAN
Length571
PositionTail
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.06
Grand average of hydropathy0.025
Instability index51.63
Isoelectric point8.85
Molecular weight62837.99
Publications
PubMed=16100779
PubMed=23299411
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32159
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.75|      25|      26|      35|      59|       1
---------------------------------------------------------------------------
   18-   38 (32.10/22.06)	AAQAIL..EARRQ....PGGENTAAMD
   39-   63 (39.76/29.29)	AAREAF..EQRRKLFAVACDDADALVQ
   64-   86 (22.89/13.38)	SARQSIvsDPGRFVDVVTTPDED....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     237.48|      49|      84|     301|     349|       2
---------------------------------------------------------------------------
  138-  174 (26.52/ 9.02)	.................LWSTLLPKLRF..PGVTDL......................................arvgaALRL.......RVAPVRLLRIE
  179-  233 (53.06/23.78)	APdkIVAVL..HLAAPLLEGKLCFDVIT..PAAAAA.......................................gaagTGGA..IQ.IPCFEKATEITIR
  234-  319 (23.15/ 7.14)	............LRGRLGIQLPPSGVFArlTALSLShcrfddqgqrdlgdavssegcpslrelrirdadvvsnlairseSLRL..VQ.LSRLEGIRQLTIS
  320-  364 (61.56/28.51)	AP..ALTEL..DLYACLLWGMPMVDIFA..PALETL...............................................hwVD.FFSSSSVR..FVE
  365-  404 (35.46/13.99)	KP..NVHRL..SVYG.MVYG.....................................................rrntpgSLQL..VQhFTEARDV.HLSLV
  405-  457 (37.74/15.26)	YP..SIMDMscELLVQAVKKLPAVEILS..LRLLTI....................................ghtfgpcVYHL..LK.MS..TGIREL...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.90|      12|      26|      89|     100|       4
---------------------------------------------------------------------------
   89-  100 (19.85/11.03)	RSPTRSSAESSS
  118-  129 (19.05/10.30)	RLPSAAAAARTS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32159 with Med32 domain of Kingdom Viridiplantae
Unable to open file!