<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32152

Description OSJNBa0027H09.3 protein
SequenceMERATAAHPASSSVSAAHWMATEDLGLRRNIINNMVKKFMTITNSQQDHHYREIQNYAIRCEQDALNKTTNKEDYLRCIAQRIMNMEMKVRRSQSLQAGTTPSTQRPSSQQQNVCTTPQNPGQVPDQHRASAPNSQIEASQEQTVMVAAPDCYLNFNTTAISPVAMCVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVQNNQQNVGMSCQHMTPPQCQVATAQQSSLGCDSPQTLEPIVIAGEVDWREEIFQKIKSFKDAYLSEVLEYDQIVHVPKLTEEQLRSLPVENAEKLRRIRHVKKIIAIMLDLLNTQKSNVRKGMQNIFPIFQQYLGQLRLSISKSKARKTVAKIGCQSQNCSENSHIVNLGSNTAPFTCDARQQKQQEQVISAKTSRMEQAIMTRTPTPQQESHGCHLLGVPSSCFSPKALQPSSTNTIEECFTPSPVTQTVQPIQVASPHVTSPSAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPIAKPGTVRAASPCTPVKSTSQSQLSKPAVTEVDSCRACVTSKLKSPVGKPETAGAASPCASVKSTVSLDVDSVTEFLQHRVVAPTVANGGSSNQAIHTLVSAAPPKAAHQADDQVQNGAEEMEAKKPFSRLIETLLSSSPEALLHSSNSMRLAIWEADRIPAPSPLPYRPRNGKMKRDFDHVTSRPISSPLRSMDESCMTYECVAFEDESSGEYNAKRQKTQVNANDALVDEIKTINNKLVDTVMNFADENGTDEIIYQNGGGMLIKLSYISMSLSPSLKSLFAASEMTIVMPVKLLVPADYPKSSPILVDNDDEQRRLSDISYAVAVAFGCAVDELPEPRSIEAMAMAWDGCVRRAVTEVAHRHGGGTFSSRHNQWRAGYLHGPMMSL
Length988
PositionTail
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.04
Grand average of hydropathy-0.520
Instability index60.76
Isoelectric point8.68
Molecular weight108377.25
Publications
PubMed=16100779
PubMed=23299411
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32152
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     119.86|      17|      21|     578|     594|       1
---------------------------------------------------------------------------
  555-  570 (24.77/11.16)	KPSVARVVSHS.ASIKS
  578-  594 (31.03/15.88)	RPEGAHAASPNITSVES
  602-  617 (31.81/16.48)	KPGTVRAASP.CTPVKS
  648-  663 (32.24/16.80)	KPETAGAASP.CASVKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     231.03|      41|      43|     209|     249|       2
---------------------------------------------------------------------------
  110-  129 (23.79/ 7.68)	......................QQQNVCTTPQNPG..QVPDQHR
  153-  188 (62.20/33.14)	Y...LNFNTTAISPVAMCVHPSQQPQ....SQQHQ.QQAKQLHP
  209-  249 (73.81/40.83)	G...QNFQQNHVLGQNASGSGTQQRQLVETPEQHQLLRMKQQHM
  251-  271 (26.62/ 9.55)	GnqqQNF..............TQR.........NQILPAQQAHL
  281-  310 (44.61/21.48)	V...QNNQQN..VGMSCQHMTPPQCQ.VATAQQSSL........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.32|      17|      35|     695|     711|       3
---------------------------------------------------------------------------
  695-  711 (29.54/18.64)	IHTLVSAAPPKAAHQAD
  731-  747 (27.78/17.04)	IETLLSSSPEALLHSSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.21|      23|      24|     385|     407|       4
---------------------------------------------------------------------------
  385-  407 (38.78/38.04)	IIAIML.DL.LNTQKSNVRKGMQNI
  410-  434 (28.43/25.27)	IFQQYLgQLrLSISKSKARKTVAKI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32152 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KVRRSQSLQAGTTPSTQRPSSQQQNVCTTPQNPGQVPDQHRASAPNSQIEASQEQ
2) PVAMCVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVQNNQQNVGMSCQHMTPPQC
3) QTVQPIQVASPHVTSPSAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPIAKPGTVRAASPCTPVKSTSQSQLSKP
4) SNQAIHTLVSAAPPKAAHQADDQVQNGAEEMEA
89
163
530
691
143
300
626
723










Molecular Recognition Features






MoRF SequenceStartStop




1) LPYRPR
765
770