<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32128

Description Expressed protein
SequenceMTSSSAPNPSPLVPTPTPSPPTANAAAAAAGAVPVSSPTPPPKDQQQEGQGGGGGVGDGGGVEEVGVGGGEAMEVDGGAGGGGGGVGDVEGGGGGGGAGGGGGGGGGGQQASPATVFRIRLKQPPSSLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPTNLVRDASSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSSNLKTFEEKFLTQQPQSSAGWPNILCVCSVFSSGSVQLHWSQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIITETGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSLPPSLNPPLWAGFAPLASYLFSLQDYLVSEGAQTKKQAQVDNETTEVASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSVQPVVLHPIFGSPANFGGQPPTQTVWSTRVNKSIPPSEDLKNPQSYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFEQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDADFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIGPDKMTVDPALLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGNSRNMVTSPTNSSPSPSTNQGNQGGVASTTGSSQMQEWVQGAIAKISNNTDGAANAAPNPISGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRIPANAQKSSDSSMQKQHLMNSKTEDNTLAVRSGLGAAKLEDGTTSRGQMVGAKGAEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPSSQVGSSNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNTRQLKINGSTNRHLSDMEEDGDSSFGIQNLWPRKRRLSERDAAFGLKTSVGLGSFLGVMGSRRDVITAVWKTGLEGEWYKCIRCLRQTCAFAQPGALAPNTSNELEAWWISRWTHACPMCGGTWVKVV
Length1301
PositionTail
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.07
Grand average of hydropathy-0.214
Instability index51.03
Isoelectric point6.36
Molecular weight138545.56
Publications
PubMed=12791992
PubMed=16100779
PubMed=23299411
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32128
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.45|      18|      29|      51|      78|       1
---------------------------------------------------------------------------
   51-   72 (29.80/16.42)	GGGGGVGDgggVEEVGvGGGEA
   81-   98 (40.65/19.50)	GGGGGVGD...VEGGG.GGGGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     231.45|      93|     125|     806|     930|       2
---------------------------------------------------------------------------
  806-  860 (49.32/26.56)	.............................................................................PEPWQASSDMLS.SIGPDKMTVDPAL.LLSiqgyvdavldlASHFITRLRRYASFC...R
  861-  980 (137.83/82.72)	TLASHAVGA.....SSGSGNSRNMVTSPT.NSSPSPSTNQGNQGGVASTTGSSQMqewvqgaiakisnntdgaanaaPNPISGRSSFMPiSINTGTFPGTPAVrLIG...........DCHFLHRLCQLLLFCllfR
  981- 1035 (44.30/ 8.24)	RRQSPRIPAnaqksSDSSMQKQHLMNSKTeDNTLAVRSGLGAAKLEDGTTSRGQM..................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     166.92|      45|      45|     438|     482|       3
---------------------------------------------------------------------------
  438-  470 (44.35/21.43)	.............................ETTEVA......SIHCCPVS.................................NFSAYVS.PEAAAQSATTTT
  471-  512 (67.79/36.79)	WGSGVTSVAFDP................tRGGSVI......TVVIVEGQ.....................................YMS.PYDPDEGPSITG
  518-  582 (33.54/14.34)	WESSVQPVVLHP.....................................ifgspanfggqpptqtvwstrvnksippsedlkNPQSYVPmPTTSDERSSSEC
  583-  633 (21.25/ 6.29)	SVDRANRLSFDPydlpndvrqlaqivysaHGGEVAvaflrgGVHIFSGP.................................NF..................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     177.73|      43|      45|     321|     365|       4
---------------------------------------------------------------------------
  271-  315 (47.12/20.45)	.....PANSSTSSNLktfeekfLTQQ...PQSSAGWPNILCVCSVFSSGSV.QL
  323-  365 (71.90/38.71)	QNSAQPRWFSTSKGL.......LGAG...PSGIMAADAIITETGALHVAGV.PL
  367-  411 (58.71/25.10)	NPSTVVVW.EVMPG........LGNGiqaTAKINATSSLPPSLNPPLWAGFaPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.33|      15|      19|       6|      21|       5
---------------------------------------------------------------------------
    6-   21 (28.56/17.47)	APNPSPLVP..TPTPsPP
   26-   42 (24.77/10.18)	AAAAAGAVPvsSPTP.PP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.22|      29|      46|     111|     141|       6
---------------------------------------------------------------------------
  111-  141 (45.50/33.08)	ASpATVFRIRLKQ..PPSSLR.HKM...RvPELCRNF
  156-  190 (43.72/22.87)	AS.ETCARIPSSNssPPFWIPiHILnpeR.PTECSVF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.76|      22|      29|     649|     670|       7
---------------------------------------------------------------------------
  649-  670 (43.23/22.08)	PPAFSSSGCCLAS.VWHDTLKDR
  680-  702 (34.53/16.32)	PPAILNAQTKVSSaVWERAIADR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32128 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EDGTTSRGQMVGAKGAEENPVGNKSARIGSGNA
2) MTSSSAPNPSPLVPTPTPSPPTANAAAAAAGAVPVSSPTPPPKDQQQEGQGGGGGVGDGGGVEEVGVGGGEAMEVDGGAGGGGGGVGDVEGGGGGGGAGGGGGGGGGGQQASPATVFRIRLKQPP
3) SSGSGNSRNMVTSPTNSSPSPSTNQGNQGGVASTTGS
1026
1
870
1058
125
906










Molecular Recognition Features






MoRF SequenceStartStop




1) VFRIRLK
116
122