<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32126

Description Os08g0564800 protein
SequenceMDGGGGGNWRPTQGADPAASGGIDPNAPAPALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQIMMKQKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSSLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEAYQMVKNLKDQYFPELNDLYNKISLKLQHVDNMVPPQKPTEQYEKMKNFKLMLERTMHVLQLNKGNIQPALRDKIPAYERQIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQNQQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQMKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQSQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRTTQRQSLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGTGTSKKMKRDTSAMPLNVSSAGSVNDSLKQTFSIGTPELQSTATSRVKWQKTEINHALMEEIHEINQQLIDTELHVCEDDAESFGATSEGTEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWENCVGA
Length1320
PositionTail
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.03
Grand average of hydropathy-0.779
Instability index72.54
Isoelectric point9.29
Molecular weight144800.42
Publications
PubMed=16100779
PubMed=23299411
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32126
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     141.55|      27|      27|     366|     392|       1
---------------------------------------------------------------------------
  207-  228 (32.66/ 7.67)	QMAGRQ......Q..QQQ....QSQNQLIYQQQQ
  355-  386 (44.07/13.87)	QLIGQQngavdMP..QQQRLPVQSNNLLNMQQTQ
  387-  415 (33.27/ 8.01)	QMLNQQ....sMPshQQQQLGSQA.NISTLQQQQ
  837-  855 (31.55/ 7.07)	QMLQQQ.....LP..AQQQL........QKQQQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     938.63|     170|     177|     416|     587|       2
---------------------------------------------------------------------------
  100-  248 (122.00/27.12)	.........................K.MLSME.TKT..QQN....PGnaqviQ.....NQNPPGS.....VPGL.........P..QGS.NPTQSSAIPLM.SQQQ.ArQPNstSVQSSLtNLGQ.NlP..GVNQtsTLQNMSGM..PQN................................................TM..N......NGLAQGASQ.D...IYAtqrqmagrqqqqqqsqnqliyqqqqimMKQKLQQN......SLMQQQSL.LQ
  251-  353 (124.83/27.85)	QMQ....SSQQPMM.QIPS...SLQP.GQSI..............PQ.....T.....QPMVQSS.....SQGGIQqnalnsvP..QSVQSLLQQPTQSAM.RQQQ.H.S........QS.SMHP.Q.P..SLQQ..AQPT......QQPNIPLQH...................QLMGQQQNLQQ............................................................................................
  416-  587 (305.38/85.92)	QQN....QQQQQLLGTVPNVP.NIQR.MHMLQ.TKA..VQQ....PQ.....Q.....QQHAQQS.....SLGLMQ.......P..QSQHNQLQQSQQHLM.SQFQ.A.QPN..QLQQQL.GMPQ.Q.P..PMQQ..RLQTSAGMlLQQNNIDQQK...................QFMQAQRGLQEVSSSTSVDSTAQTG..H......TGTGTGDWQEE...AYQ...........................MVKNLKDQYFPELNDLYNKISLkLQ
  589-  743 (151.83/35.98)	VDNmvppQKPTEQYEKMKNFKlMLERtMHVLQlNKG..NIQ....P...............ALRD.....KI...........PayERQIISILNSQKR...PRVQ.G.QQT..QFQQSA.G..Q.G.PtsNIPQ..QQQPSQG..LQQHD.NHTN...................QMPQASMP....SMSTGLQSSGAAGiqHlpaspaTNFGVPATQQNvtnAPQ...........................ATSNLE...................
  745-  896 (146.52/34.38)	..........TQ..GS..NFN.SLQH.GSM...SGA..LQQgstgPM.....QgtlnaQQQASSSmlshnSVGTMQ.......A..NANSMQ...............A.NAN..SL.QQL.KQQQ.Q.E.hHMMQ..NQQMKRQM.FQQF...QQKqmlqqqlpaqqqlqkqqqsQ.MQVP...QHHSGN...DANELKV..R......QGAAM...KPG...IYQ..................................QHLAQRNNFYN.......
  897-  989 (88.08/16.79)	........................QQ.MK..Q.GSAfpISS....PQ.....N.....LQ.A..S.....S............P..QISHHSPQVDQHNLLpSQVKtG.TPL..QSANSP.YMPSpS.P..PVAP............SPIPVDSEK..........................PLSNLSSS..LTNTGQAT..H......QQT..................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.65|      54|     202|     998|    1053|       3
---------------------------------------------------------------------------
  998- 1053 (83.85/59.98)	IAVNTPG..ISASPLLAEFTSVDGNQANMPTQV..LTKSSAAERPL...D.....RLLKalRTTQRQS
 1056- 1121 (69.80/43.71)	AAVSDIGsvVSMIDRIAGSAPGNGSRAAVGEDLvaMTKCRLQARNFithDgtgtsKKMK..RDTSAMP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32126 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDGGGGGNWRPTQGADPAASGGIDPNAPAPALAGGDWRSQLQSEARNRIVNKIMDTL
2) PLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRT
3) QIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQNQQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQMKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQSQSIAVNTP
4) QKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSSLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEA
5) RKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQ
1
1009
640
233
95
57
1048
1003
560
228










Molecular Recognition Features






MoRF SequenceStartStop




NANANA