<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32117

Description Uncharacterized protein
SequenceMAVVKKKRYLSKSLKNGRAARVQRNRTEYAGINGSSLLSGSMELLEVDEESQSLVMGDDESVAEFEQRRLAAESMNAITHDESDTISFRNYLLANYLRGANYFNALTIHNVPVSRIKPPKLFQSPISLMELKKMIELQKAGIGKIKAVMDTWIKERESMVSTEHTKFYKSRMKVLDTDGLEGIHHVVKNIESRLGGRLQDRAYHLYDPEVFGTKFRGDMREAPEDYWEKYPELVKERKEKEAKMLREKEEEELRKKEEEERRKREEEEAKQRQQLEDDQLKRNQQPSETPSGALPLQITVPLSGAENSSGGHTPAPGMVTASMGNSSDIGLGTDQQPQPLPVTQEPLLNVASAQIPPQDQAQDIENVFGEYEAEPFNTGFDDEFADLDNVFF
Length392
PositionTail
OrganismCandida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (Yeast) (Torulopsis glabrata)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Nakaseomyces> Nakaseomyces/Candida clade.
Aromaticity0.07
Grand average of hydropathy-0.807
Instability index57.82
Isoelectric point5.18
Molecular weight44571.52
Publications
PubMed=15229592

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
regulation of single-species biofilm formation on inanimate substrate	GO:1900231	IMCGD









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32117
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.96|      17|      20|     349|     368|       1
---------------------------------------------------------------------------
  349-  368 (25.41/23.18)	NVASaqiPP.....QDQAQDIENVF
  370-  391 (24.54/13.95)	EYEA...EPfntgfDDEFADLDNVF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.00|      17|      20|     246|     265|       2
---------------------------------------------------------------------------
  249-  265 (26.67/17.53)	EEEELRKKEEEERRKRE
  267-  283 (25.32/ 8.50)	EEAKQRQQLEDDQLKRN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.94|      16|      20|      50|      67|       5
---------------------------------------------------------------------------
   50-   65 (25.95/19.50)	ESQSLVMGDDESVAEF
   73-   88 (26.99/13.13)	ESMNAITHDESDTISF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.28|      14|      20|     206|     222|       6
---------------------------------------------------------------------------
  206-  222 (16.77/22.55)	YD..PEVfgTKFRGDmREA
  227-  242 (20.51/11.41)	WEkyPEL..VKERKE.KEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      65.84|      23|      23|     149|     171|       7
---------------------------------------------------------------------------
  149-  164 (21.55/10.53)	..........MDTWIKERESMVSTEH
  165-  185 (27.07/14.85)	TKFYKSRmkvLDT.....DGLEGIHH
  187-  201 (17.21/ 7.14)	VKNIESR...LGGRLQDR........
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32117 with Med2 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RKEKEAKMLREKEEEELRKKEEEERRKREEEEAKQRQQLEDDQLKRNQQPSETPSGALPLQITVPLSGAENSSGGHTPAPGMVTASMGNSSDIGLGTDQQPQPLPVTQEPLLNVASAQIPPQDQAQDIENVFGEYEAEPFNTGF
237
380










Molecular Recognition Features






MoRF SequenceStartStop




1) DIENVFGEYEAEPFNTGFD
2) MAVVKKKRYL
363
1
381
10