<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32116

Description Uncharacterized protein
SequenceMSLDVSVRERTRNMNQLMRILMDINHLNGGDSGVLEKLRLSARNFESAIYEKSSTKQEYMASMREKIEGMQQTLQQKKHTPATPSQQVPPPQQQQQQQGSQPRITLTPQQQQLLLSKMQLAVIPQQLLSKIPNLPAGVSTWKDVTELASKNMLDQRTMEIVRGVYKVHQQLLLKASFEQQRKRQPPQQQQPQQPQQQQQQQQQQQQQQQQQQQQQQSPQNVTNGNLFHILLRLFQDEFLSSKYQEQLSKLFKMEEIKHIIQQAIEVGKKYATQRYQLGHMLTNEERVVFFKKFLNHVILKKMEETKGSNKTDATMMNLTDNHTQMGTGQESTVPQQFNTDQVISNNQMPVNNFNMNMNNNQMPQQPFQQQMPQLTLQQQQNLFQQQLQQQQQQQQQQQQQQQQAQIQAQQQQQQQQQQQQQQQQQQQQQQQLLMQNLAATKLDIEEIRNISMKAAKLQLQLTDLTNTLTNEEKDAIRSRLKTNQKLFVQVSNFAPQVYMMTKSKNFLKEVFQLRIFVKEILEKCANGIFVVKLETVDKLIMKYQRYWDSMRVQLLRRQSQTKQQEIQGALQQMQRVEAQNNNNNNNYNNNNNNNSTNNNTNNNPQMPNLNNSNIITNFSTPFQVPIATPNNITNAVKKESRKPSVSASNASTPGTTSGKAKPKSRSNRQNSRSNSINEVSSDSTKQPQTTEAVSKEEAAKIHEANVRKSEILSRFKHRQKLFITSPADLFLSTLGDCLGLKCEEIETSYKIPKNMADFINGVKISKTEQRIRTQDTVVTSVVDNKLLMQSKTGGDKRTYGIDPAALSAVFKGVQGTTNMNTLQLFSSSSLSPVTEENA
Length838
PositionTail
OrganismCandida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (Yeast) (Torulopsis glabrata)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Nakaseomyces> Nakaseomyces/Candida clade.
Aromaticity0.05
Grand average of hydropathy-0.946
Instability index62.74
Isoelectric point9.75
Molecular weight96459.79
Publications
PubMed=15229592

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro
xenobiotic metabolic process	GO:0006805	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32116
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     661.37|     197|     213|      98|     309|       1
---------------------------------------------------------------------------
   26-   97 (80.45/15.35)	HLNGGDSGVLekLRLSARNFES...AIYEKSSTK.....................QE.......YmASMREKIEGM..........QQ.TLQQ...KKHTPATPSQ....................................................................................................................qvpPPQQQQQQ.............................
   98-  220 (146.66/43.66)	..........................................................................................................QGSQPRITLTPQQQQllLSKMQLAVIPQQLLSK..IPNLPAGVSTWKdvTELASKNMLDQRTMEivrgvykvHQQL...........................LLKASFEQQRKRQ...PPQQQQPQQPQ.QQQQQQQQQQQQQQQQQQQQQSPQN
  221-  370 (227.13/59.55)	VTNGNLFHIL..LRLFQDEFLS...SKYQEQLSKL...FKMEEiKHIIQQAIEVGKK.......Y.ATQRYQLGHMLTNEERvvFFKK.FLNHVILKKMEETKGSNKTDATMMNLTDNHTQ..MGTGQESTVPQQFNTDqvISNNQMPVNNFN..MNMNNNQM....................................................................PQQPF.QQQ......................
  371-  431 (49.97/ 6.18)	...................................................................................................................................................................MPQLTLQ........QQQN...........................LFQQQLQQQQQQQ...QQQQQQQQQAQiQAQQQQQQQQQQQQQQQQQQQQQQQ
  432-  598 (157.17/36.47)	LLMQNLAATK..LDIEEIRNISmkaAKLQLQLTDLtntLTNEE.KDAIRSRLKTNQKlfvqvsnF.APQVY....MMTKSKN..FLKEvFQLRIFVKEILE.KCAN............................................................................gifvvkletvdklimkyqrywdsmrvqLLRRQSQTKQQEI...QGALQQMQRV.....EAQNNNNNNNYNNNNNNNSTNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.49|      15|      17|     600|     614|       2
---------------------------------------------------------------------------
  600-  614 (28.53/15.69)	TN.NNP.QMPNLNNSNI
  616-  632 (17.96/ 7.08)	TNfSTPfQVPIATPNNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.78|      21|      32|     639|     670|       3
---------------------------------------------------------------------------
  639-  661 (29.95/35.93)	ESRkpS...VSASNASTPGTTSGKAK
  672-  695 (29.83/ 9.64)	RSN..SineVSSDSTKQPQTTEAVSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32116 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KMEETKGSNKTDATMMNLTDNHTQMGTGQESTVPQQFNTDQVISNNQMPVNNFNMNMNNNQMPQQPFQQQMPQLT
2) RQSQTKQQEIQGALQQMQRVEAQNNNNNNNYNNNNNNNSTNNNTNNNPQMPNLNNSNIITNFSTPFQVPIATPNNITNAVKKESRKPSVSASNASTPGTTSGKAKPKSRSNRQNSRSNSINEVSSDSTKQPQTTEAVSKEEAAKIHE
3) SFEQQRKRQPPQQQQPQQPQQQQQQQQQQQQQQQQQQQQQQSPQ
4) SSTKQEYMASMREKIEGMQQTLQQKKHTPATPSQQVPPPQQQQQQQGSQPRITLTPQQ
301
557
176
53
375
703
219
110










Molecular Recognition Features






MoRF SequenceStartStop




NANANA