<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32106

Description Os09g0306700 protein
SequenceMAAAAAERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRPLPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHVTPVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILNNLSQHRSVATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGNSNIAVSSSLGGIQSNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLGVTNSSAMNMPIVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVPTQQPPMQQQQLQQQQNQLQQQNQLHQQHQLQPQNQLQQQHQLQQQLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQMQQMQQQQQQQQIQQMQQQQQMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMVGTGMGQQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
Length842
PositionUnknown
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.04
Grand average of hydropathy-0.480
Instability index56.61
Isoelectric point8.71
Molecular weight90681.44
Publications
PubMed=16100779
PubMed=23299411
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32106
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.30|      19|      19|     726|     744|       1
---------------------------------------------------------------------------
  508-  525 (38.64/ 9.22)	NAQQQQQQQQ.QQ.QQ..QQPP
  730-  750 (37.41/ 8.69)	MQQMQQQQQQ.QQIQQmqQQQQ
  751-  771 (35.26/ 7.76)	MQQMQQQQQQpQQLQQ.qQQPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.43|      24|      25|     664|     688|       2
---------------------------------------------------------------------------
  666-  693 (32.50/10.11)	QNQL.....QQQNQLH....QQHQLqPQNQLQqqhQL
  694-  711 (33.75/ 7.79)	QQQL.....QQQ.QLQ....QHMQL......Q...TQ
  794-  825 (30.19/ 6.14)	PQMVgagmgQQYMQGHgrtvQQMM..QGKMAP...QG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     148.25|      23|      23|     458|     480|       3
---------------------------------------------------------------------------
  312-  328 (24.84/ 7.88)	VANGVSQ.GLSSVQ...............S.PS.....P
  352-  388 (22.55/ 6.45)	IQQSIRPGGPANVSilnnlsqhrsvatiiSG.GMP.GIP
  389-  412 (27.57/ 9.59)	MSGTGQSIGSQQVV...............QNTAFGsNTP
  458-  480 (42.86/19.16)	NQNMISSLGTTTVS...............SAPAMM.PTP
  484-  502 (30.44/11.38)	QQAGVNSLGVTN.S...............SA...M.NMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     250.65|      79|      89|     127|     214|       5
---------------------------------------------------------------------------
  127-  214 (118.44/106.01)	HEVQKHCILVAASNPYPLPTPVYRPLvqSSDHKENNDGAKESCLADAETVAKSFAQCSVSlsvvSP...KQlPtlKAIYNAAKRNPRAADP
  218-  299 (132.21/90.90)	HAKNPHFLVLLSDNFLEARTALSRPL..PGNLVTNHPITKMDTAATSVPVPTSNGNPSVN....GPmltRQ.P..NGVVANIKTEPTTLPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.12|      18|      61|     712|     729|       6
---------------------------------------------------------------------------
  712-  729 (34.98/13.41)	GLPLQQQQSQ..GHPLQQQQ
  774-  793 (32.13/11.59)	GTGMGQQQPQmvGTGMGQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.84|      14|      19|     419|     436|       7
---------------------------------------------------------------------------
  422-  437 (19.95/16.24)	SSSLGGIQsnIGISGP
  442-  455 (25.89/ 7.89)	GGSMGSTQ..LGQGGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.31|      13|      19|     526|     538|       8
---------------------------------------------------------------------------
  526-  538 (25.11/20.97)	PKYVKIWEGTLSG
  544-  556 (25.20/21.08)	PVFICKLEGYRSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32106 with Med25 domain of Kingdom Viridiplantae
Unable to open file!