Description | Transcription elongation factor A1 |
Sequence | MTTEDEIIRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQTTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDSEEKKKEPASSSQNSPEAREESSSSSNSSSRKEEGSAPSNSFIPSFPRAPSTSDSVRVKCREMLSAALRTGDDYIAIGADEEELGSQIEEAIFQELKNTDMKYKNRVRSRIANLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC |
Length | 304 |
Position | Unknown |
Organism | Gallus gallus (Chicken) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Galliformes> Phasianidae> Phasianinae> Gallus. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.817 |
Instability index | 53.08 |
Isoelectric point | 8.76 |
Molecular weight | 33983.28 |
Publications | PubMed=15592404 PubMed=15642098 |
Annotated function |
|
GO - Cellular Component | nucleolus GO:0005730 IEA:Ensembl transcription factor TFIID complex GO:0005669 IEA:Ensembl |
GO - Biological Function | nucleic acid binding GO:0003676 IEA:InterPro zinc ion binding GO:0008270 IEA:InterPro |
GO - Biological Process | positive regulation of transcription by RNA polymerase II GO:0045944 IBA:GO_Central transcription, DNA-templated GO:0006351 IEA:InterPro |
Binary Interactions |
Repeats | >MDP32102 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 68.15| 22| 27| 87| 113| 1 --------------------------------------------------------------------------- 80- 102 (32.00/15.99) DGPSTDKDSEEKKKEPASSSqNS 107- 128 (36.15/23.88) EESSSSSNSSSRKEEGSAPS.NS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 78.75| 18| 27| 208| 225| 2 --------------------------------------------------------------------------- 191- 205 (17.77/11.90) ...KNRVRSRIANLKDAK 208- 225 (31.66/27.54) NLRKNVLCGNIPPDKFAK 238- 255 (29.31/24.89) EMRKNLTKEAIREHQMAK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 53.45| 14| 27| 261| 274| 3 --------------------------------------------------------------------------- 261- 274 (28.18/17.23) TDLFTCGKC..KKKNC 289- 304 (25.27/14.80) TTFVVCNECgnRWKFC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 106.41| 34| 148| 1| 38| 4 --------------------------------------------------------------------------- 1- 38 (50.19/39.08) MTTEDEIIRIAKKMDKMVQKKNAAgaldLLKELKNIPM 155- 188 (56.23/34.21) LRTGDDYIAIGADEEELGSQIEEA....IFQELKNTDM --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) AKSLIKSWKKLLD 2) RIAKK | 68 9 | 80 13 |
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