<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32068

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMNVEFQKTLSNLEDKLNALITSLTTSPTASGAPAAALALLDADDSLTSAIETLRRHQENYARILKLRAEAESLEEKVKGIVRDVVGYEKEIRRICGDDEPSDSDADDVSDDDDLDSGGDRVQTKPGGLRNTKEIDYKLLLDFARRISKYNHQAAADAAANATQAAKGRGRSLQPGDQDMAMTGVNGGPGAEEGAEPVSSVTKEATSWLDESAKMTRQVYMIPYPMEDRIRMGLMGQIQLAAAEGRPGFNPDQEVERLIREAEGLGSTEPVVPASQPMGEERRHANEAAEAAAQAGAASSGTMAAPAPAPKPKATLDLDLYDPDDDEMM
Length328
PositionMiddle
OrganismNeosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (Aspergillus fumigatus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus> Aspergillus subgen. Fumigati.
Aromaticity0.03
Grand average of hydropathy-0.605
Instability index45.40
Isoelectric point4.53
Molecular weight35158.58
Publications
PubMed=16372009

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364141
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP32068
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     233.71|      49|     132|     144|     192|       1
---------------------------------------------------------------------------
   92-  129 (49.86/18.72)	RRICGDDEPSDS..DA................................DDV.S...DDDDLD.SGGdrVQ.TKPGGLR
  144-  192 (82.94/35.18)	RRISKYNHQAAA..DAAANAT......................QAAKGRGR.SLQPGDQDMA.MTG..VN.GGPGAEE
  195-  268 (40.26/13.94)	EPVSSVTKEATSwlDESAKMTrqvymipypmedrirmglmgqiQLAAAEGRpGFNP.DQEVErLIR..EA.EGLGSTE
  281-  326 (60.66/24.09)	RR....HANEAA..EAAAQAG......................AASSGTMA.APAPAPKPKA.TLD..LDlYDPDDDE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32068 with Med4 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAADAAANATQAAKGRGRSLQPGDQDMAMTGVNGGPGAEEGAEPVSSVTKEATSWLD
2) LAAAEGRPGFNPDQEVERLIREAEGLGSTEPVVPASQPMGEERRHANEAAEAAAQAGAASSGTMAAPAPAPKPKATLDLDLYDPDDDEMM
3) RRICGDDEPSDSDADDVSDDDDLDSGGDRVQTKPGGL
153
239
92
209
328
128










Molecular Recognition Features






MoRF SequenceStartStop




1) ANEAAEAAAQAGAASSGTMAAPAPAPKPKATLDLDLYDPDDDEMM
284
328