<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32059

Description "FF domain containing protein, expressed"
SequenceMATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPGQYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAIGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMKTKLKQSDMKERSDTDGKQRRSSDPPRRR
Length1078
PositionUnknown
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.06
Grand average of hydropathy-0.802
Instability index61.04
Isoelectric point8.28
Molecular weight116635.37
Publications
PubMed=12791992
PubMed=16100779
PubMed=23299411
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32059
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     548.93|      68|      68|     273|     340|       1
---------------------------------------------------------------------------
   14-   63 (61.33/20.70)	................................PEAAEVP....S.........AAP.ASESEGPFDSGVVAAATT....PA.....V.............V...DS...AVEGD..APA..AP.....AP....TS.G
   64-  131 (74.42/26.84)	SG............P.........AapsmpanP.ASPAT..............PGP.PRPQFAGSPAYA..SPPA....PAfsynvLPrpsP....RPQ.V..........GSG..AAQ..QQ...LASP....PA.M
  141-  202 (67.17/23.44)	LQ...........PP.........V.......P......................G.QYFGNRPSFSYNVVSHAN....AG.....LP...T....GQQ.FqldTGtnhAVQVSrfVP....PSSLQPPA....PM.N
  203-  256 (71.01/25.24)	LA...........RPssafpgagaM.......PP....................NP.P.....GS....IRLPF.....PG......P...P....RPS.I...NT...FVASP..QQA..QPQA..SQL....PS.N
  257-  335 (113.54/45.22)	SGssdvstsrsdtRS.........V.......PEASPQTMQL.S.........TGP.PSTSTAGSPSITVQMPTN....PS.....LP...T....RPE.V...FG...AIGAS..VPG..QPSTILSAP....PS.L
  336-  402 (63.31/21.63)	LG...........RP.........M......tPSASP...................fPQTSQ..SPT.AFQQPGQqqlyPS.....YP...SahgvQPQpL...WG...Y.......PP..QPTGFQQPPfqsyPSgL
  406-  457 (57.39/18.85)	LG...........RP.........M.......VGSSSVTAYLpS.........IQP.PGVSTTDRDS......................................K...ELSSA..NPGseQPTQQGSQN....SD..
  458-  512 (40.76/11.04)	..............Q.........L.......EDKRTTAIQD.SdswsahkteAGV.VYYYNALTGESTYQKP......PG.....YK...G....EPE..............K..VAA..QP...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     290.42|      38|      68|     945|     982|       2
---------------------------------------------------------------------------
  712-  745 (45.09/26.98)	.WEKELPKIVFDPRFKAI.PSHSR...RRSTFEQYVRTR
  780-  813 (48.49/29.66)	DYKEFKRKWGTDPRFEAL..DRKE.RDA..LFNEKVKSI
  843-  876 (50.66/31.37)	RWTKVKENFRSDARYKAMKHE.....EREVAFNEYIAEL
  883-  919 (32.33/16.93)	AEQAAKAKLDEQAKLKEREREMRKrKEREEQEMERVK..
  945-  982 (60.12/38.82)	SWTESKPRLEKDPQGRAVNPDLGK.GDAEKLFRDHVKDL
 1016- 1049 (53.74/33.79)	SWTEAKGLLRSDPR....YNKLAS.KDRESIWRRYADDM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     152.86|      48|      49|     560|     607|       3
---------------------------------------------------------------------------
  560-  597 (55.17/31.45)	....................AESGPLKGSSTSLQDAGTIGNKEEISIDIDTP..AVQTGG
  598-  645 (59.12/34.33)	RDSLPLRQTV........apASSSALDLIKKKLQDAGA....SSVPSPLATPssASELNG
  649-  692 (38.57/19.34)	TDAAPMGHQVsisgekskdnSGDGNMSDSSSNSDDEEHGPSEEE................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.65|      26|      62|     751|     777|       4
---------------------------------------------------------------------------
  751-  777 (39.08/35.18)	KEKRAAQRAAVEA.YKQLLEEaSEDINS
  814-  840 (39.58/30.01)	EEKVQSVRNAVIAeFKSMLRE.SKDITS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32059 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVK
2) AGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKE
3) AGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAIGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMV
4) APAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAA
5) ELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPA
6) MATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYA
7) SSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSW
883
625
166
99
555
1
413
919
699
411
138
610
95
473










Molecular Recognition Features






MoRF SequenceStartStop




1) ALDLIKKKLQD
2) DGKKYYYDNKLK
3) LPKIVFDPRFKAI
4) MKTKLKQ
5) SIWRRYAD
6) VAAATTPAVVDS
7) VVYYYNALT
8) YKEFK
614
532
716
1049
1040
37
482
781
624
543
728
1055
1047
48
490
785