<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32059

Description "FF domain containing protein, expressed"
SequenceMATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPGQYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAIGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMKTKLKQSDMKERSDTDGKQRRSSDPPRRR
Length1078
PositionUnknown
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.06
Grand average of hydropathy-0.802
Instability index61.04
Isoelectric point8.28
Molecular weight116635.37
Publications
PubMed=12791992
PubMed=16100779
PubMed=23299411
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32059
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     548.93|      68|      68|     273|     340|       1
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   14-   63 (61.33/20.70)	................................PEAAEVP....S.........AAP.ASESEGPFDSGVVAAATT....PA.....V.............V...DS...AVEGD..APA..AP.....AP....TS.G
   64-  131 (74.42/26.84)	SG............P.........AapsmpanP.ASPAT..............PGP.PRPQFAGSPAYA..SPPA....PAfsynvLPrpsP....RPQ.V..........GSG..AAQ..QQ...LASP....PA.M
  141-  202 (67.17/23.44)	LQ...........PP.........V.......P......................G.QYFGNRPSFSYNVVSHAN....AG.....LP...T....GQQ.FqldTGtnhAVQVSrfVP....PSSLQPPA....PM.N
  203-  256 (71.01/25.24)	LA...........RPssafpgagaM.......PP....................NP.P.....GS....IRLPF.....PG......P...P....RPS.I...NT...FVASP..QQA..QPQA..SQL....PS.N
  257-  335 (113.54/45.22)	SGssdvstsrsdtRS.........V.......PEASPQTMQL.S.........TGP.PSTSTAGSPSITVQMPTN....PS.....LP...T....RPE.V...FG...AIGAS..VPG..QPSTILSAP....PS.L
  336-  402 (63.31/21.63)	LG...........RP.........M......tPSASP...................fPQTSQ..SPT.AFQQPGQqqlyPS.....YP...SahgvQPQpL...WG...Y.......PP..QPTGFQQPPfqsyPSgL
  406-  457 (57.39/18.85)	LG...........RP.........M.......VGSSSVTAYLpS.........IQP.PGVSTTDRDS......................................K...ELSSA..NPGseQPTQQGSQN....SD..
  458-  512 (40.76/11.04)	..............Q.........L.......EDKRTTAIQD.SdswsahkteAGV.VYYYNALTGESTYQKP......PG.....YK...G....EPE..............K..VAA..QP...............
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     290.42|      38|      68|     945|     982|       2
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  712-  745 (45.09/26.98)	.WEKELPKIVFDPRFKAI.PSHSR...RRSTFEQYVRTR
  780-  813 (48.49/29.66)	DYKEFKRKWGTDPRFEAL..DRKE.RDA..LFNEKVKSI
  843-  876 (50.66/31.37)	RWTKVKENFRSDARYKAMKHE.....EREVAFNEYIAEL
  883-  919 (32.33/16.93)	AEQAAKAKLDEQAKLKEREREMRKrKEREEQEMERVK..
  945-  982 (60.12/38.82)	SWTESKPRLEKDPQGRAVNPDLGK.GDAEKLFRDHVKDL
 1016- 1049 (53.74/33.79)	SWTEAKGLLRSDPR....YNKLAS.KDRESIWRRYADDM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     152.86|      48|      49|     560|     607|       3
---------------------------------------------------------------------------
  560-  597 (55.17/31.45)	....................AESGPLKGSSTSLQDAGTIGNKEEISIDIDTP..AVQTGG
  598-  645 (59.12/34.33)	RDSLPLRQTV........apASSSALDLIKKKLQDAGA....SSVPSPLATPssASELNG
  649-  692 (38.57/19.34)	TDAAPMGHQVsisgekskdnSGDGNMSDSSSNSDDEEHGPSEEE................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.65|      26|      62|     751|     777|       4
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  751-  777 (39.08/35.18)	KEKRAAQRAAVEA.YKQLLEEaSEDINS
  814-  840 (39.58/30.01)	EEKVQSVRNAVIAeFKSMLRE.SKDITS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32059 with Med35 domain of Kingdom Viridiplantae
Unable to open file!