<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32029

Description Uncharacterized protein
SequenceMTHESFLAATVLAEDGPTARAILCGVTESRERHYYISVRHYKPQNSASQGLSTIKQLQKERRPTSAQWHELHQILVKQPSVVQVRTDVTEEAEHIMNATEKLQSDLIEESYCWWLEGIEYSLTRMFVASLNPDPTAPHQVPNPKTLQPVGNFWILYVRAKVDSSPAATMPDRVKQAQAQLVRVQEQFKGVFDFPKPGHTTLIPIGSILYPESDSDEDVGEDREGTEVTGRQGFNYNYSEEPSSCVPSSFRPTLVSVIDCPLIPLPGKPEPLVSSGRASRLASQMNPWTVVGLVPFQGRDVSARANCDEGKPTCKRCEKSRRECGGYRPEFEIVHRDQTGSTVRRLRKAGDAQHQHPTTPRPFVFIQEEPQPWRRRQSPSPSPVSALTIPIAHRASCYFASNFILVPVGVAPHGFMEYLVPLMDTEPPESALRYAFNACAFALLGNRARADGINLAQLSLKEHTMALAQTHKALGHPAAASTDSTLAAVLLLCLYETRGREDMCRTRLGALLFTAVRHHLVSRVLSSGLPLPFGTDWWMAGGDTGSLFANCQRFNLRFSELRAEANRLLGNASRSPESLAQMHETATRIQDLDQEVADWLVSIPDEFRFRTVCLVPADGPGNPSGSSGEKEAFPGRVDVYPDFVSAMAWNMARVSRLLLASLNIRIAARVCSPADYRTTPEYKNSKPVCESTIADIIASVPYHLGWRMHGKGLNGPGLSTFACGEEGTCKALPALFLIWTLTCVKNHDMSTEEQRGWAKGRLKFIAEEVGLKYAHIVNEANLRFPSMMIRKDGMLAAGVDPLQVINEAKMARIIPPTPESMTSPSPRPSA
Length829
PositionHead
OrganismChaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (Soil fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Sordariales> Chaetomiaceae> Chaetomium.
Aromaticity0.07
Grand average of hydropathy-0.315
Instability index55.50
Isoelectric point7.30
Molecular weight91785.55
Publications
PubMed=25720678

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
DNA-binding transcription factor activity, RNA polymerase II-specific	GO:0000981	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32029
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     663.64|     206|     257|     250|     477|       1
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  250-  477 (324.40/247.20)	RPTLVSVIDCPLIPLPGKPEPLVSSGRASRLASQMNPWTvvglVPFQgrDVSARANCDEGKPTckRCEKSRRECggYRPEFEIVHRDQTGS....TV...RRLRKAGDAQHQHPTTPRPfvfIQEEPQPWRRRQSPSPSPVSALTIPIAHRASCYFASNFILVPVGV.APHGFmeYLVPLMDTEPP..ESALRYAFNACAFAlLGNRARADGINLAQLSlkehTMALAQ..THKALghPA
  516-  733 (339.24/201.67)	RHHLVSRVLSSGLPLPFGTDWWMAGGDTGSLFANCQRFN....LRFS..ELRAEANRLLGNAS..RSPESLAQM..HETATRIQDLDQEVAdwlvSIpdeFRFRTVCLVPADGPGNPSG...SSGEKEAFPGRVDVYPDFVSAMAWNMARVSRLLLASLNIRIAARVcSPADY..RTTPEYKNSKPvcESTIADIIASVPYH.LGWRMHGKGLNGPGLS....TFACGEegTCKAL..PA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32029 with Med18 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TVRRLRKAGDAQHQHPTTPRPFVFIQEEPQPWRRRQSPSPSPVS
341
384










Molecular Recognition Features






MoRF SequenceStartStop




NANANA