<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32027

Description Uncharacterized protein
SequenceMAGPQIQHTQRPNSAYYTGLNGSGGGGGGGGGGGASASGMASSASHTGLHALRQVTNETELIYRGSHSNGTVNELPSTAAHHQLLAGRIPHQHHHQHQQPHHQQQHQQQVSSIAGTGSSATDALIGTIATSAGGGCGSGGGGSTSTAMTALGHLKKSNTQRSIEIIVDATQCGKEVGATATPLDPDDVEQGGGGQESSSSLRKSSRHRHRPLHRRLISYLRNLFQGSTTQTAMATLVLAWHCLSKHSELEEFETPARYRPDSLSALSRATRFTEDEIKRIYRGFKAECPTGVVKEDTFKVIYSQFFPQGANPTLYAHYVFNTLDQDRSGIVSFEDFVQGLSILSRGSVEEKLRWTFSLYDINGDGFITREEMTDIVTAIYELMGRLPDEYPEEEKIKGKVEQIFQKMDINRDGVVTLEEFLEACRNDDAISRSMSVFDTSF
Length441
PositionHead
OrganismDrosophila pseudoobscura pseudoobscura (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.07
Grand average of hydropathy-0.527
Instability index44.29
Isoelectric point6.15
Molecular weight47882.45
Publications
PubMed=15632085
PubMed=17994087
PubMed=23185243

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
calcium ion binding	GO:0005509	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32027
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     321.13|      89|     106|      23|     124|       1
---------------------------------------------------------------------------
    5-   99 (150.74/73.20)	QIQHTQRPNSAYYTG......L....ngSGGGGGGGGGGGASASGMASSASHTGLHALRQVTNE..TELIYR....GSHSNGTVNEL.PSTAAHHQLlagrIPHQHHHQHQQ
  103-  187 (74.09/42.23)	QQQHQQQVSSIAGTGssatdaLigtiatSAGGGCGSGGGGSTSTAM......TALGHLKKSNTQrsIEIIVDatqcGKEVGATATPLdPDD.....................
  189-  254 (96.31/40.16)	...............................EQGGGGQESSSSLRKSSRHRHRPLH..RRLISY..LRNLFQ....GSTTQTAMATL...VLAWHCL....SKHSELEEFET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.52|      15|      20|     274|     291|       2
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  274-  291 (25.53/22.33)	EDEIKRIYRGFkaeCPTG
  295-  309 (29.99/17.98)	EDTFKVIYSQF...FPQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.29|      25|      45|     348|     372|       3
---------------------------------------------------------------------------
  348-  372 (45.16/30.99)	VEEKLRWTFSLYDINGDGFITREEM
  396-  420 (41.14/27.66)	IKGKVEQIFQKMDINRDGVVTLEEF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32027 with Med30 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KEVGATATPLDPDDVEQGGGGQESSSSLRKSSRHR
2) MAGPQIQHTQRPNSAYYTGLNGSGGGGGGGGGGGASASGMASSASHTGLHALRQVTNETELIYRGSHSNGTVNELPSTAAHHQLLAGRIPHQHHHQHQQPHHQQQHQQQVSSIAGTGSSATDALIGTIATSAGGGCGSGGGGSTSTAMTALGHLK
174
1
208
155










Molecular Recognition Features






MoRF SequenceStartStop




1) MAGPQIQHTQR
2) RHRPLHRRLISYLRNL
1
208
11
223