<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32025

Description Trap100
SequenceMKENNKILQLIYVAWRERWSDSQWGINIKKVLPRGVSGDVYNLADCLMQQALIGSTANPLVLNYLKHSLCAHLVSHAAVLRCIARYDKLERVYCITSLLEFLVSIVDGVTCRIKSEEAVLPGAVVQLIYWLLQIFARTVQHYELYGEISAEQSYMLDQTCVVIDRISQHQFMLSMLYVGSREEFECHGKIRDKYAAIKGSLTNSNFTLSSPGVEQQLQQFAYIDVSHLDLQKLNVLPAEKISYCIQPLLAVEVLLIPCKETSYYVAELQMLQRLKRYTNTRLFYEIIRAGFLTLSNVADTSPDTMWGAFMFFKMPHIIKQLHALQRVPGEQPPPSDYIPELVEALELLIQDNLLLDFMDTKCSCNMIEFLLNDWTKQQLVNDVHVKKFASQREAASLLLKKCDNGQQTPSNIIFIKRAEVPLSGVLKTLCTNKVQDMVNVLCQVPVGNSFELILSVATVDGRLKTFVSRLIQCNENSKPVPAELGKLCVTRSTLFDVSFLMLTSIVQTYGSDVVLSDRGDSFFEKWVRECMVERNKLKNPRQILALCDDSMVDELLLSLSKPEAAQLKPCSLSWQETCLNLPGVLHHVLIAWEQETLSSADVKNILDNIKRRLFSFSVCATSFLCAYMYSVRETELLKPLNMIQQFLAPLTSEELSSQEYAKERLALSYPIIRKMQHDVHPAPSTKSRLISHSPLIEQFREVWKTVAEAGHLPVRAVQTLESLLLAGGAAWLTTQLVEQLLTCKYIRDMSKTMDIVFAVMHLDIEKGTEALLQYVVPPLMLRRQGEDINEPQSLVLARLCVYCVISCLETRSGVASSSFSGLKKRSRSNDEEDQATNVAKVRKVIGDGSENSNDFTDNAGGLAGPRLASPSSSTELRATPQTLKEPLQSSIQHIFSVFLQFVSGDELSPKAVFVYQFISLLVECGGERVAPVLRLLPANLVQQLLKVLPTEDIRVGLISRLYDLHVQGGRQAAVADLCLWRNMQMARHSIHL
Length992
PositionTail
OrganismDrosophila pseudoobscura pseudoobscura (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.07
Grand average of hydropathy0.031
Instability index47.48
Isoelectric point6.52
Molecular weight111810.61
Publications
PubMed=15632085
PubMed=17994087
PubMed=23185243

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblMetazoa

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:EnsemblMetazoa

GO - Biological Process
ecdysone-mediated induction of salivary gland cell autophagic cell death	GO:0035072	IEA:EnsemblMetazoa
pupal development	GO:0035209	IEA:EnsemblMetazoa
regulation of transcription by RNA polymerase II	GO:0006357	IEA:EnsemblMetazoa









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32025
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     243.88|      66|     369|     195|     371|       1
---------------------------------------------------------------------------
  131-  161 (35.11/35.61)	....LLQIFAR.TVQHYEL..YGEISAE.QSYMLDQTCV..............................
  212-  280 (103.48/187.35)	GVEQQLQQFAYIDVSHLDLQKLNVLPAEKISYCIQPLLAVEVllIPCKETSYYVAElQMLQRLKRYTNT
  767-  828 (105.29/32.23)	GTEALLQ...YV.VPPLMLRRQGEDINEPQSLVLARLCVYCV..ISCLETRSGVAS.SSFSGLKKRSRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     269.99|      90|     142|     368|     470|       3
---------------------------------------------------------------------------
  368-  470 (126.91/103.88)	EFLLND........WTKQQLVNDvhvKKFASQREaaslLLKKCDNGQqTPSNIIFIKRAEV....PLSGVLKTLCTNkvqdMVNVLCQVPVGNSFElILSVATVDGRLKTFVSRL
  512-  613 (143.08/84.15)	DVVLSDrgdsffekWVRECMVER...NKLKNPRQ....ILALCDDSM.VDELLLSLSKPEAaqlkPCSLSWQETCLN....LPGVLHHVLIAWEQE.TLSSADVKNILDNIKRRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.07|      18|      89|     194|     211|       6
---------------------------------------------------------------------------
  194-  211 (32.60/22.49)	YAAIK.GSLTNSNFTLSSP
  284-  302 (28.47/18.73)	YEIIRaGFLTLSNVADTSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32025 with Med24 domain of Kingdom Metazoa
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