<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32004

Description AAEL013943-PB (Fragment)
SequenceQVLTRGVSGDVYNLADCILQQAVVGSGANTLFLSYLKHSLCAHLISHAAVLKRISKYDHFEMHHCLIALLEFLESIIGGVTCRGKQEEGLLTKAMLSLVYWLMQIYEHAIETFSENRSLTTEQQEVVEKTANVLEKIVQSQFLLGVVFVGKFEDPELFGMLAKKCLEIENLTVKSGFVPPVVSQKNVTVNDYIRKVASIETETLEIKEFDGKGVEPITYCMQPLIAIDILFNPNCDTQMYVLEFLSIQALKGFPLSRLYCEIIRACLTCLNNVSGTSRESYICAFTFIKVPQIMRQIHLQTRVLTPNDFEDAKLDYSPDVVEAFELLLQDSAILDFMDAKCACNTVEYLLNEMLKHHLINEKYSKLIAAKRDGITSSLQKLDLNTNQHSIVKFVLRAEPPLVGILKTLSSDYNKVQEALLGMLCQVLSGNSFELILSVATVEGKLKTFVAGLIKCNENSKQVPGEMGKPAMTRAALFDVSFLMLVFIVQNYGSEGVLTDGTDSFFEKWVRECMVEKHKSKSPMNMVKLCDQNKVDELIVSLNSPDGLKATSLKWQEICTNIPGLLYQVLLAWENETLSTGEIKKFLDSLKSRFCCFSICATSWLCAYMQIIRQDELLKPMNMIQQFVTNISSEEMMQQEYLKERLGLTVQIIRKMQIDFQRLPVASPKMRNQLQSQSLVSQAPLEEQFEEVWKGVLEKGWLPIEATLALENLLQSCGPFWLVDKLVQQIFHCKYIREMNKTMDIVFAIMHLDIERCTIALLSQLVPMMLLNKLQISEIVDPFSRVLAKLCVYCIVATMEAPAVPTKKRSRAAITAEGDELDTLCSTPKMRKIGSESCDSSSSDFMLEQVLAARDNPAPLKEPLQGCLQTLFRTFSQYIVSDELSPKIFFMFQLLSLLVEVGKDRIKPVLKLIPNGLIQNMMKINATDDMTVGFILRLYDLNTASGRQFAMSDLCLFRNIQMRKDSIKL
Length968
PositionTail
OrganismAedes aegypti (Yellowfever mosquito) (Culex aegypti)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Culicinae> Aedini> Aedes> Stegomyia.
Aromaticity0.08
Grand average of hydropathy0.093
Instability index42.59
Isoelectric point5.80
Molecular weight109436.03
Publications
PubMed=17510324

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32004
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     192.40|      60|     155|     667|     730|       1
---------------------------------------------------------------------------
  667-  730 (92.88/66.11)	PKMRnQLQSQSLVSQAPlEEQFEEVWKGvlEKGWLPIEATL..ALENLLQSCGPFWLVDKLVQQIF
  827-  888 (99.52/57.42)	PKMR.KIGSESCDSSSS.DFMLEQVLAA..RDNPAPLKEPLqgCLQTLFRTFSQYIVSDELSPKIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     249.13|      64|     154|     215|     279|       2
---------------------------------------------------------------------------
  215-  279 (109.11/72.51)	EP.......ITYCMQPLIAIDILF.........NPNCDTQmYVL..EFLSIQALKGFPLSRLYCEIIRACLTCLNNV.SGTSRE
  305-  369 (53.00/29.31)	TPndfedakLDYSPDVVEAFELLLqdsaildfmDAKCACN..TV..EYLLNEMLKHHLINEKYSKLIAA...............
  372-  433 (87.02/52.72)	DG.......ITSSLQKL...DLNT.........NQHSIVK.FVLraEPPLVGILK..TLSSDYNKVQEALLGMLCQVlSGNSFE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.42|      15|     315|     280|     299|       5
---------------------------------------------------------------------------
  280-  299 (24.79/27.57)	SYICAFtfikvPQIMRQIHL
  602-  616 (30.63/19.67)	SWLCAY.....MQIIRQDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.29|      31|      41|     889|     922|       7
---------------------------------------------------------------------------
  889-  922 (44.15/39.56)	FMFQLLSLLVEVGKDRIKPVLKLIPNglIQnMMK
  933-  963 (55.14/36.47)	FILRLYDLNTASGRQFAMSDLCLFRN..IQ.MRK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32004 with Med24 domain of Kingdom Metazoa
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