<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32003

Description AAEL013943-PA (Fragment)
SequenceQVLTRGVSGDVYNLADCILQQAVVGSGANTLFLSYLKHSLCAHLISHAAVLKRISKYDHFEMHHCLIALLEFLESIIGGVTCRGKQEEGLLTKAMLSLVYWLMQIYEHAIETFSENRSLTTEQQEVVEKTANVLEKIVQSQFLLGVVFVGKFEDPELFGMLAKKCLEIENLTVKSGFVPPVVSQKNVTVNDYIRKVASIETETLEIKEFDGKGVEPITYCMQPLIAIDILFNPNCDTQMYVLEFLSIQALKGFPLSRLYCEIIRACLTCLNNVSGTSRESYICAFTFIKVPQIMRQIHLQTRVLTPNDFEDAKLDYSPDVVEAFELLLQDSAILDFMDAKCACNTVEYLLNEMLKHHLINEKYSKLIAAKRDGITSSLQKLDLNTNQHSIVKFVLRAEPPLVGILKTLSSDYNKVQEALLGMLCQVLSGNSFELILSVATVEGKLKTFVAGLIKCNENSKQVPGEMGKPAMTRAALFDVSFLMLVFIVQNYGSEGVLTDGTDSFFEKWVRECMVEKHKSKSPMNMVKLCDQNKVDELIVSLNSPDGLKATSLKWQEICTNIPGLLYQVLLAWENETLSTGEIKKFLDSLKSRFCCFSICATSWLCAYMQIIRQDELLKPMNMIQQFVTNISSEEMMQQEYLKERLGLTVQIIRKMQIDFQRLPVASPKMRNQLQSQSLVSQAPLEEQFEEVWKGVLEKGWLPIEATLALENLLQSCGPFWLVDKLVQQIFHCKYIREMNKTMDIVFAIMHLDIERCTIALLSQLVPMMLLNKLQ
Length774
PositionTail
OrganismAedes aegypti (Yellowfever mosquito) (Culex aegypti)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Culicinae> Aedini> Aedes> Stegomyia.
Aromaticity0.08
Grand average of hydropathy0.098
Instability index42.61
Isoelectric point5.64
Molecular weight87746.75
Publications
PubMed=17510324

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32003
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     265.43|      61|      98|     614|     674|       1
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  522-  573 (43.67/26.09)	........PMNMVKlcdqnkvdELIVSLNSPDGLKATSLK.................WQEICTN.....IPGL.LYQVllawE
  574-  612 (49.95/30.99)	NETLS....TGEIK........KFLDSLKSRFCCFSICATSWLCAYMQIIR................................
  614-  674 (101.04/70.85)	DELLK...PMNMIQ........QFVTNISSEEMMQQEYLKERLGLTVQIIRK.MQIDFQRLPVA.....SPKM.RNQL....Q
  710-  774 (70.76/47.23)	ENLLQscgPFWLVD........KLV.....QQIFHCKYIRE.MNKTMDIVFAiMHLDIERCTIAllsqlVPMMlLNKL....Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     205.01|      69|     105|     187|     291|       2
---------------------------------------------------------------------------
  191-  265 (105.72/105.18)	DYIRKVaSIETETLEIKEF.DGK......GVEPITYCMQPLIAIDILfNPNC..DTQMYVLEflsiQALKGFPLSRLYCEIIRA
  292-  369 (99.30/77.80)	QIMRQI.HLQTRVLTPNDFeDAKldyspdVVEAFELLLQDSAILDFM.DAKCacNTVEYLLN....EMLKHHLINEKYSKLIAA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32003 with Med24 domain of Kingdom Metazoa
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