<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31985

Description Os09g0569800 protein
SequenceMAVASARSSLPSSSSSPLPPLSPQPVVPAGVERMLVRAGGGTRSLREIDEEEDDDDDDGGKTYVSVGKDLKDGKANIQWAARKLQPQQGDVNKLLVLLHVHQPADRIMSGLCKVPAKQLEEKELRAYRKIEKDDMNKLLEQYLSYCRAFPKVQAEKLVIEKNSVANGIVELIDQHHITKLVMGTSSFSVKRQVPKSKVAAIVHQQAKPYCQILYICKEALACTREASQFADKGDSPRSSSGSSLSDKSEFPPRSVSLPSWYSGFLGSPDQQSLPRRSNSISHPFPFSRQLENGVENISPIRPNSVDVAPKGCSPNSSHQSKGSSPTLTDLDTVDGLSVPVSSSSSEEHQHFMVEANMQNEMFEQWQQVRNELERSRKEASEGRQKAEKELFEASKMFRARENSLCKEKIAVEERLTREKVSLEKEHLQIYNELQKANEQIMELERKLMHANSLMEELQTVQGELQRQKDNAVKEAEKMSQINCNNVSCSTSAVALTEFTYTEIKEATNDFDESKMIGHGGCGSVYKGFLRHTTVAIKKFNREGITGEKEFDDEVEILGRMRHPNLVTLIGVCREAKALVYEFLPNGSLEDRLQCKHQTDPLPWRMRIKIAADICTALIFLHSNKPKGIAHGDLKPDNILLGDNFVGKLGDFGISRSLNLTNTTITPYHQTNQIKGTLGYMDPGYIASGELTAQYDVYSFGVVLLRLLTGKSPLGLPSEVEAALNNEMLQQVVDASAGEWPPEYSKKLAILALRCCRYDRKERPDLAKEAWGVLQAMVNYPDNKCKIPSFFICPMTQEIMKDPHIAADGFTYEGEAIKDWLQRGHKTSPMTYLSFTHYELIPNNALRFAIQEWQMKQQL
Length858
PositionTail
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.07
Grand average of hydropathy-0.526
Instability index47.95
Isoelectric point6.36
Molecular weight96141.20
Publications
PubMed=16100779
PubMed=24280374

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31985
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     687.29|     233|     261|       7|     265|       1
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    7-  265 (332.71/337.74)	RSSLPSSSSS...PLpPLSPQpvVPAGVERM.LVRAGGGTRSLREIDEEEDDDDDDGGKTYVSVgkDLKDGkANIQWAARKLQPQQ.....GDVNKllvllHVHQPADRIMSGLCK.....VPAKQLEEKELRayrkiEKDDMNKLLEQylSYCRAFPKVQaEKLVIEKNSVANGIVELIDQ.....HHITKL...VMGTSSF.....SVKRQVPKSKVAAIvhQQAKPYCQIlyICKEaLACTREASQFADKGDSPRSSSGSSLsDKSEFPPRSvSLPSWYSGFL
  270-  529 (354.58/268.81)	QQSLPRRSNSishPF.PFSRQ..LENGVENIsPIRPNSVDVAPKGCSPNSSHQSKGSSPTLTDL..DTVDG.LSVPVSSSSSEEHQhfmveANMQN.....EMFEQWQQVRNELERsrkeaSEGRQKAEKELF.....EASKMFRAREN..SLCKEKIAVE.ERLTREKVSLEKEHLQIYNElqkanEQIMELerkLMHANSLmeelqTVQGELQRQKDNAV..KEAEKMSQI..NCNN.VSCSTSAVALTEFTYTEIKEATNDF.DESKMIGHG.GCGSVYKGFL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31985 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGGGTRSLREIDEEEDDDDDDGGKTYVSVG
2) ENISPIRPNSVDVAPKGCSPNSSHQSKGSSPTLTDLDTVDGLSVPVSSSSSEEHQHFMVEANMQNE
3) FEQWQQVRNELERSRKEASEGRQKAEKELFEA
4) MAVASARSSLPSSSSSPLPPLSPQPVVPAGVERML
38
295
362
1
67
360
393
35










Molecular Recognition Features






MoRF SequenceStartStop




1) AGVERMLVR
29
37