<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31941

Description Mediator of RNA polymerase II transcription subunit 6 (Fragment)
SequenceMNRLGITAPSGVSDSSLELTWQDSTWIPILNTSNVLEYFSQASNSFFDKTCNNEIIKMQRLNPDQLQNMTGLEYMLLHVQEPILYVIRKQHRHSPQQVTPLADYYIIAGVVYQAPDLNSVLNSRLLSAVHHLQSSFEEASAFSRYHPSKGYYWDFKSQKGPEKVKIPEKEKPKEESSSLFQRQRVDMLLGELIMKFPLPTPPQPKTAATARVKTESENGAQDAKDKADVKQETKVVKPPADKKPRLN
Length247
PositionHead
OrganismDendroctonus ponderosae (Mountain pine beetle)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Coleoptera> Polyphaga> Cucujiformia> Curculionidae> Scolytinae> Dendroctonus.
Aromaticity0.08
Grand average of hydropathy-0.636
Instability index41.70
Isoelectric point8.77
Molecular weight28101.64
Publications
PubMed=23537049

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31941
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.36|      29|      30|      55|      84|       2
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   55-   84 (47.70/34.70)	IIKMQRLNPDQLQNMTGLeYMLLHV..QEPIL
   87-  117 (47.66/30.07)	IRKQHRHSPQQVTPLADY.YIIAGVvyQAPDL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31941 with Med6 domain of Kingdom Metazoa
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