<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31924
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MTDAKMPLMLENGMSDAMQVDQLDVDDLFGDGVGVGVGLSLQTARPLSKQLRQRIDDLRTRGCCQTVAWSKSGVIASVSPDGMSLETRFLRSHPDDGDWGLSEPTKIDLITTHPSSPIVHLSWAGTASPELAVIDATGRVSVLTYSVNLNRPFLTRRWDADSLDEFHAVVGCYWLPLAPGPQGKQYYISHGPAVKEGASYRYESSAVHAFGPCHPNSSKSALLCVSTNGAMKMYWAQNNNRIEESSIELESVNSSDDLVTHAALHSDKNLLWVVLATASRQLKVVRVQIKWGLPQSNSDNRPPPGSQSLNPSLQEKHVAISSWAPNGPTTSPLDSAMTQLTHLEILPSTMDPSGQAWAPLAILAVRTYLPTPNTPYQEPQSIVDKWEVVNDQAQNLHPAFEQLGSRRNSTSTGSAPAPMSHLKKCDSVAINKIIVGVHPLQFGKVICLVFSDGSSEYRDRFTLQKIYNETNLDRIMTLNQVGFTFQDDSHCLQAALSPTNCSLVKIQDDGKVKWSRLHYALGDIGNSAKDAQYAAVLAGLTVAASTATFHSINYDDILAVARPFADKPRFAYDWINEVVRMLKIPVDYSEDTHHDSLVRNAPLQMCLSILNHLGYKGMFQPRSFGGKFAMLALNARNIVILITIASNTPVTIREKLSPLDEHEVVDALAGCAKWCLDLLSWLTDSVFSLLDDAQFQALLTPQRFSELSAYLQSRSDVSLHFLLCSSTRGFLSAICRRILHLEILSNRAIDFYERRAHDPSSSQNQKVVQVALHKAYQKMQRVTSQSLIKTQEFDRLLTVLSTDIRAAYQTSFASLATTGHSSHNNKNQASGGKAVDAQMKAAQVRCELGMLLASNPPAPLLGVLTKFFNTDLRAYRAQTDPAKLFFGDFELLEIDDDGRSLAARKAKGRFIDNFKRVELVGPPPAAKMGGEESGGGGGGGGGRTQWRRCVRCSAVMEDASGSRPGYTFVLAQQRKCSCGGHWALLPRGTLVS |
Length | 992 |
Position | Tail |
Organism | Colletotrichum orbiculare (strain 104-T / ATCC 96160 / CBS 514.97 / LARS 414 / MAFF 240422) (Cucumber anthracnose fungus) (Colletotrichum lagenarium) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum>
Colletotrichum orbiculare species complex.
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Aromaticity | 0.07 |
Grand average of hydropathy | -0.221 |
Instability index | 43.11 |
Isoelectric point | 7.34 |
Molecular weight | 108754.26 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP31924
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 425.96| 140| 201| 56| 220| 1
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56- 220 (220.71/145.76) DDLRTRGCCQT...VAWSksgVIASVSpdgmsletRFLRSHPDDGDWGLSE........PTKIDLittHPSSPIVHL...SWAG...TASPELAVIDATGRVSVLTYSVNlnrPfLTRRWDAdsldefHAVVGCY.WLPLAPGP.QGKQYYIS............HgPAVKEGASYRYESSAVHAFGP.CHPNSSKS
256- 427 (205.25/95.79) DDLVTHAALHSdknLLWV...VLATAS........RQLKVVRVQIKWGLPQsnsdnrppPGSQSL...NPSLQEKHVaisSWAPngpTTSPLDSAMTQLTHLEILPSTMD...P.SGQAWAP......LAILAVRtYLPTPNTPyQEPQSIVDkwevvndqaqnlH.PAFEQLGSRRNSTSTGSAPAPmSHLKKCDS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 340.55| 110| 158| 496| 618| 2
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496- 618 (176.56/144.67) LSPTNCSLVKIQDDGKVKW..SRLHYALGDIGNSAKDAQYAAVLAGLTVAASTATFHSinYDDI......LAVARPFadkprfaYDWINEVVRMLKI....PVDYSEDTHHD.SLVRNAP.LQMCLsilnHLGYKGM
656- 779 (163.99/107.12) LSPLDEHEVVDALAGCAKWclDLLSWLTDSVFSLLDDAQFQALLTPQRFSELSAYLQS..RSDVslhfllCSSTRGF.......LSAICRRILHLEIlsnrAIDFYERRAHDpSSSQNQKvVQVAL....HKAYQKM
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