<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31872
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MPGIDGPPAQDAWRKAFKNSFLRRLRADRLRAPLKALYARSPADPSIIAETLISFRAANGVHDDPLLFSYAKLLLKERYISTSDLLKALLRHSKYGSEKRPKAASKRLSGLPSCEERIFILLTQLHSTTELPISALQLYLLIHSVTYWLKAVSDYELEKQIAGDADHASDLQSFGLCEALGALALSILGNQSIRVVVKQKWWKGRRAKIVAEMESYDMQVLQNINSQYAGKLQQITGLSPYIALDDKRRPVFSKEAVLSSVGELPAVHSRAGLFIWLNAALVARPLTDDATIQSHLFNRYSGDSQSLVSDLLVATFDVLTNAMLRKESRQNVKVIRSFLVNKVPVIISTLSGISAESCIQMALIPGGMISMNPLPPITNGATETREHLTAARLDLLQACHLHGLISEATVAAILQSSVALPRVQKLNKDSLISQCANNVSRLESLVEDLDGMQGNAGAISGCIVETVHNLCVNKDTMSLKTVCNALIKKIPRMDIVMQYAQPSMILFPLCNILNGWTHDQDQSEFTPQYEEFASILLLTLAVIQRYELHWSDIGPIEETFVSRLLDNMSTSLPESELTEQQKAQLSKWIMEGLFAVDEHGETSGIGDEVMRQCPPQDFYRLVPTLFEQSVLASRAGALSMRTFKGGLELLLEPFLLPSLIMGLGWLASHSWEDQNDAEILLQILDKLLKPSSSSHETQAMHKTILAMVATPLYQSLQALLTRQPDKKKATELSKILEPYLNQQRILSCRKGELDEWLQTESGLASHVQRGIRDLTTWAATSSSPPNPPPRYTFKEFAVACQVLEGDALLDAMVEEVAQSLNISVALDVCVALACAPVPFPMAAQHETHTTGLTAKLRQSIRLVSEDPQRLLDRKRLHAEVLVMLNRRVYQQLRMNQVPSMAQAIPTQDQNTTDQIMQELGLDLAADNAVGNDGTMNQDQIMSNIDIATNPTEQELAAMTAPTNDLGGDVQSGQASTSMMGNVDGLADLDFGIGQSNANNTSQPMDLQAQEEDIFAGLDMGGEIQMSDIDFDFS |
Length | 1033 |
Position | Tail |
Organism | Dothistroma septosporum (strain NZE10 / CBS 128990) (Red band needle blight fungus) (Mycosphaerella pini) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Dothideomycetidae> Mycosphaerellales> Mycosphaerellaceae> Dothistroma.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.106 |
Instability index | 50.44 |
Isoelectric point | 5.29 |
Molecular weight | 113932.28 |
Publications | PubMed=23209441
PubMed=23236275
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP31872
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 349.52| 116| 130| 264| 387| 1
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264- 387 (173.03/170.46) LPAVHSRaGLfiwLNAALVARPLTDDATI.QSHLFNRYSGDSQ..SLVSDL..LVATFDVLT.NAmlRKESRQNVKVIRSFLVNKVPVIISTLSGISAESCIQMALI.....PgGMIsMNPLPPITNGATETREH
396- 522 (176.49/139.57) LQACHLH.GL...ISEATVAAILQSSVALpRVQKLNKDSLISQcaNNVSRLesLVEDLDGMQgNA..GAISGCIVETVHNLCVNKDTMSLKTVCNALIKKIPRMDIVmqyaqP.SMI.LFPLCNILNGWTHDQDQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 103.96| 24| 82| 922| 945| 2
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922- 945 (45.03/25.28) DLAA...DNAVGND..GTMNQDQ....IMSNID
955- 983 (26.05/11.82) .LAA...MTAPTNDlgGDVQSGQastsMMGNVD
1005- 1029 (32.88/16.67) DLQAqeeDIFAGLD....MGGEI....QMSDID
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.88| 18| 175| 700| 717| 3
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700- 717 (31.37/23.77) MHKTILAMVATPLYQSLQ
876- 893 (30.51/22.90) LHAEVLVMLNRRVYQQLR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 84.28| 27| 87| 644| 670| 4
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644- 670 (49.58/25.35) KGGLEL..LLEPFLLPSLIMGL..G....WLASHS
727- 761 (34.70/15.86) KKATELskILEPYLNQQRILSCrkGeldeWLQTES
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