<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31857
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MQLSLQIEAWRNFFERCLSNRLEPNDFTTFATILHQQHPLPSFYLCTLFLSPTPGNNICLDPKASRYVFCLLSLGFVDIPNILRALWRSSTCRAINCEQLNEDQENSWARSFNAEETIFYRLTKIISSGLALKTVKEAVETVELCIQWLEGTITLAQAQHQLQALLNVQSDEVTAQIMATAIAKGHICKTSRKRLGKVVSNFITLMLLHWPQGVDRLEAFRTETLPAIEPVEKASKSGVDKDIEDIIGEGISGAISVNNMVVSEMDEVNTRVGLYIFLSSLLVGRPLIDDNAIFKYLNNRYQGDLRSTVVDLILAAFDVLANAMVRNEKDQTKNLLRCFLINKLPHLLSTLCTQLFPPITSEICITEALSQVDTTNFPTLSAMFDETSGNNMFPESVRQDFCFACCLHGLIAESSIETLLGDVPIQSLPAEGRYLKNELVQKCLSESDRVERMIDELEYMDGNVGANSQAITELITRLCNNKETMALKSICDKLVRNPSSLDIMLLFDKPISILQPICDLLDNWHYDEDQGEYQPVYEEFGSILLLLLSFVKRYDLTPLSLGPRSSDSFVLKIIQVPRTTSHSSLSQTTQSHLKSWLLGLFSPENSGLTDDLMSSCPPQDFYLLIPFLFSSIVLASSTYGLVSTTLSSGLEYLVDTFLLPSLVPGISFLATHLWENHGDKDAVVQILSSLIITPLSNTNNINSEALEHSLRWLQRAEPQRQDIEPLSKALRCYLGWERCAVSQHTELENWTSTNGGGLLMAIKQTITNLLQWHLQPDANPANYTHRQILVGVKILGAKRVIKIIVEELKSGIEAGHGGAALDIASALVSSSDATAWDSTFGLGSAVGNNEETRYLQRRMNLREALKNEAYNAPKLQRTDPFTAETIVRLYRKVESLVVNGNIEGHEVLTAAELNAVVDMSGLAQTDGTHDDISGLENIATISGLDMGHMVNFDGLDDGFAETGVNLMIEGDFMRSEERQGTLLEGMEF |
Length | 988 |
Position | Tail |
Organism | Blumeria graminis f. sp. hordei (strain DH14) (Barley powdery mildew) (Oidium monilioides f. sp. hordei) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes>
Erysiphales> Erysiphaceae> Blumeria.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.039 |
Instability index | 45.86 |
Isoelectric point | 4.88 |
Molecular weight | 109957.26 |
Publications | PubMed=21148392
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP31857
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 80.07| 22| 25| 703| 724| 1
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703- 724 (39.15/22.88) SEALEHSLRWLQRAEPQRQDIE
727- 748 (40.93/24.22) SKALRCYLGWERCAVSQHTELE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.47| 17| 25| 478| 494| 2
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478- 494 (30.83/19.36) LCNNKETMALKSICDKL
505- 521 (30.64/19.19) LLFDKPISILQPICDLL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.83| 22| 574| 376| 401| 3
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376- 401 (34.53/32.61) NFPTLSAMFDETsGNNMFPESvrqDF
951- 972 (42.30/25.84) NFDGLDDGFAET.GVNLMIEG...DF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 165.27| 50| 575| 34| 87| 4
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34- 87 (88.98/70.54) LHQQHPLPSFYLCTLFLSptpgNNICLDPKASRYVFCLLSLG...FVD..........IPNILRALW
612- 674 (76.28/49.78) LMSSCPPQDFYLLIPFLF....SSIVLASSTYGLVSTTLSSGleyLVDtfllpslvpgISFLATHLW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 56.77| 18| 19| 840| 857| 10
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840- 857 (31.09/23.17) FGLGSAVGNNE.ETRYLQR
859- 877 (25.68/17.71) MNLREALKNEAyNAPKLQR
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