Description | Mediator of RNA polymerase II transcription subunit 34 |
Sequence | MESEAIQEDLQNLDVELKDVQGQISALIEHQDRLYERKSELKTLLKALAASGSPVASSGGSSAIENWSETFEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQSSMVFYEYSGLQNLYDIVRYCQSKTKCRRSAFFRHFGEPSQDCNGMCDNCALSSEVKEVDVSDLSKLVVSMVQETQAKDQRVTMLQLGDKLRNKHKDLIAELKRDEVEHLVIKLIVDSVLKEEFQHTPYSTNAYVTMGPLANQLLQGRKTIKMETSSRQTKKLKRSITFSGLELKLDELRKEISAADGSILPHTVLSTQQIGSISSQKPVSLQELESIIGKLKTEKYGDRILEEVMRHEAVSEQLVEDPTKEETCKSRLRKRAKTQKDVVLVESSGEEEA |
Length | 705 |
Position | Unknown |
Organism | Arabidopsis thaliana (Mouse-ear cress) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.385 |
Instability index | 41.60 |
Isoelectric point | 7.21 |
Molecular weight | 79367.96 |
Publications | PubMed=11058127 PubMed=11130712 PubMed=27862469 PubMed=12856935 PubMed=16371241 PubMed=17560376 PubMed=18419780 PubMed=19755539 PubMed=22021418 PubMed=23771268 PubMed=24265739 |
Annotated function |
3'-5' DNA helicase that may play a role in the repair of DNA
(PubMed:18419780, PubMed:19755539). Its DNA unwinding activity in vitro
is dependent on magnesium, and ATP or dATP (PubMed:18419780,
PubMed:19755539). Can use GTP/dGTP, CTP/dCTP or UTP/dUTP as nucleotide
cofactors (PubMed:18419780, PubMed:19755539). Catalyzes Holliday
junction branch migration and replication fork regression
(PubMed:19755539, PubMed:23771268). Disrupts D-loop structures
(PubMed:18419780).
ECO:0000269 PubMed:18419780 ECO:0000269 PubMed:19755539 ECO:0000269 PubMed:23771268 |
GO - Cellular Component | chromosome GO:0005694 IBA:GO_Central cytoplasm GO:0005737 IBA:GO_Central mediator complex GO:0016592 IDA:UniProtKB |
GO - Biological Function | 3'-5' DNA helicase activity GO:0043138 IDA:TAIR ATP binding GO:0005524 IEA:UniProtKB-KW DNA binding GO:0003677 IEA:UniProtKB-KW four-way junction helicase activity GO:0009378 IDA:TAIR metal ion binding GO:0046872 IEA:UniProtKB-KW |
GO - Biological Process | DNA duplex unwinding GO:0032508 IBA:GO_Central DNA recombination GO:0006310 IBA:GO_Central DNA repair GO:0006281 IBA:GO_Central DNA unwinding involved in DNA replication GO:0006268 IBA:GO_Central double-strand break repair via homologous recombination GO:0000724 IBA:GO_Central |
Binary Interactions |
Repeats | >MDP31700 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 258.66| 69| 300| 237| 306| 1 --------------------------------------------------------------------------- 238- 306 (111.52/81.79) ILKTQFPKVPMVALTATATQKVQN.DLIEMLHIPKCVKF.VSSVNRPNLFYSVREKSAVGKLVVDEIAEFI 494- 542 (53.10/34.01) ........VSMVQETQAKDQRVTMlQLGDKLR.NKHKDL.IAELKRDEV......EHLVIKLIVD...... 544- 608 (94.04/63.20) VLKEEFQHTPYSTNAYVTMGPLAN.QL...LQGRKTIKMeTSSRQTKKLKRSITF.SGL.ELKLDELRKEI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 70.65| 22| 299| 71| 106| 2 --------------------------------------------------------------------------- 85- 106 (39.38/50.75) FGISKY.......RANQKEIINAIMTGRD 152- 180 (31.27/11.29) LGISAYmltstsgKENEKFVYKALEKGED --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
NA | NA | NA |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab