<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31512

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMPNYYLADDTKYTRPSTSAMSNLTELCGLKGLADSMARFDPVTGEKNKLRKSYKNQLLDLTGKFDIPSQPSLVRIIRDPVLAETGGKSLSVFDRDLLSRGLDFDATPSTGIPGFNPAMLGMPGPGKPGIGPQVGGNRLLSVRRSYNTESARESSNNEETPMARRKRKGDDDTDGERRRKRK
Length181
PositionHead
OrganismYarrowia lipolytica (strain CLIB 122 / E 150) (Yeast) (Candida lipolytica)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Dipodascaceae> Yarrowia.
Aromaticity0.06
Grand average of hydropathy-0.836
Instability index50.06
Isoelectric point9.71
Molecular weight19938.32
Publications
PubMed=15229592

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). 
ECO:0000250
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central
GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP31512
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.38|      31|      36|      35|      65|       1
---------------------------------------------------------------------------
   35-   65 (54.47/31.50)	SMARF..DPVTGEK.NKL...RKSYKNQLLDLTGKFD
   71-  104 (39.52/21.24)	SLVRIirDPVLAETgGKS...LSVFDRDLLSRGLDFD
  125-  145 (17.39/ 6.05)	GKPGI..GPQVG.G.NRLlsvRRSY............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31512 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DFDATPSTGIPGFNPAMLGMPGPGKPGIGPQVGGNRLLSVRRSYNTESARESSNNEETPMARRKRKGDDDTDGERRRKRK
102
181










Molecular Recognition Features






MoRF SequenceStartStop




1) LVRIIR
2) MPNYYLADDTKYTR
3) PMARRKRKG
4) TDGERRRKRK
72
1
160
172
77
14
168
181