<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31463

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMSDSFTVSLRPIREKRDRPDSLPREIAQINAQWGSFRELSEAKLREMIEEDKHKDHWEEDDEGDKESTDLETSEQLDQLYKRRAEIIQYALQAHMEASFALDFVSLLLSKHQPRQAETSMSPFLKSAAPLGSLNSEVVNPPPRPDSTLKDIKSVARGWRLQNFNSAADKLLNAGSRLETEVNSETKYWNEVLAVKEKGWKICRLPRESQALGVQYGFLEATPIFRDRGLAALRRTDDGSLFLDKGLIPLKSQGVRVRVRRGDRIVGCSKVCRPPQDAESIESRILQARDTVFEEELFYEVMREARILGTQGVKTRQNLVQVPVSDEQEILLDLVDWDQDRDPDAADSTEQDVFADAVAHSIRILLTYAHRQNLRRRTQPPPPLAPKRRPVPEYHILRPIMAYLQHKSHIQWLESLINDLRGVLQSAGIPCDFKATQFSSIGTLQPSNQVPKVEAVAGVFLAPFLSTFSGNLVTPQSSFRIQIRTNLAVPPFGTFYELSVNLPQYPDVQPPNHVGLQDEVSAILTHVIMLDIAAAIPLQCRDTADKEAKERVSWDVDYPHHGELHFLSRNGQSRKMKISLSRQELTIETYQLNRMRGVTPGAATSPTLWQTWRADSPETRPTLSEFVAQASQP
Length632
PositionHead
OrganismEmericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus> Aspergillus subgen. Nidulantes.
Aromaticity0.07
Grand average of hydropathy-0.516
Instability index55.42
Isoelectric point6.04
Molecular weight71643.21
Publications
PubMed=16372000
PubMed=19146970

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31463
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.82|      37|      40|     120|     159|       4
---------------------------------------------------------------------------
  120-  159 (58.22/48.58)	MSPFLKSAAPL...GS.LNSEvVNPPPRPDSTLKDIKsvARGWR
  160-  200 (54.60/35.05)	LQNFNSAADKLlnaGSrLETE.VNSETKYWNEVLAVK..EKGWK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.20|      18|      32|     314|     331|       6
---------------------------------------------------------------------------
  314-  331 (29.30/21.59)	TRQNLVQVPVSDEQEILL
  348-  365 (28.90/21.19)	TEQDVFADAVAHSIRILL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.88|      24|      27|     417|     443|       7
---------------------------------------------------------------------------
  417-  443 (35.61/30.86)	NDLRGVLQSAGIpcdFKATQFSSI.GTL
  447-  471 (37.27/22.11)	NQVPKVEAVAGV...FLAPFLSTFsGNL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31463 with Med17 domain of Kingdom Fungi
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