<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31442
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLIMEDGINVDDLFGEPGSLELGLSPSTPSPRGLAQRLDEMRLIGCCQKIAWSKLGCIAYISQDGLRVNVRHLQCRPSDGKWVLSEETPLLPVTDAHGGHTLVHLCWNEPGAELAVADSSGRVSIYSISIALNSIAGHRQAAFDPDDDGAQIVGMMWLNTQRTVHSFYQAAKVQGRWAYSPFRRRPIGPFHPVNKAGLVCVTRSGIIRLLYQNPDSRWAEISAELKNTGYSDRLLTHAALVSTQGGILVATHSACQKICLYRVHIAWTPTQYDPGQQKPPAPWPVPSFRFLHCKVESQCDVPGTNRNAGDNAQGLPSFTNSFYCLTGLDIVLPALDNPAGSTANPWVVAIYSAPLHVTQDHPQQQGPASVIVRWQLDTGPLTLHPKFDDVPSKKNNAQVKPKLELRRLDDVYSDKYAISIDQIEYGNVLAITYDDGSVVFYDPKTMAVFNGVDDANTVTSLAQAGFHHPPEPSGLHISFSPNACAAVMLDGEGQTHLRLTEHSYGAEGGLHDENKYSAAIAALTLAFCRGCGSDVNTDDILLILVRQLTPEAQATFINEAYRALPINCNFTVEQDKLMNHPYIPRCLSIQAALGFKNKYTPRSFASSIPWAVLQLRHASVLYAFFFQYNKGGATEPHDPDVLRMVLGNTKWALDFSFYVLNELFDLADDFESLSGDQEAFTQKLKSTSSLPLIILLSSMSRAFLRFICRGLRGIYAGYATAAPLSGDARVYYAEIYQTLESAPIRIDAYEKFLAGVDSAVRHAYHGAGFGDAERPGPEKELLVNARVPPVLVPAVSTILRQTVPALKTEIDRITIYMGDYSWLGLSNDRRTEMYRRNRDVDIIKKIPCRPAASALPETNANANANQNGKSSTQVQQRRRRCVRCCEVSSDTHPPRSLLSFRMIAKLGLLRACVCGGMWTLEPSVYSSAQSSGAPVGQATGRTPALMAAGLAGSS |
Length | 955 |
Position | Tail |
Organism | Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) (Aspergillus fischerianus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus>
Aspergillus subgen. Fumigati.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.172 |
Instability index | 43.23 |
Isoelectric point | 6.81 |
Molecular weight | 104662.81 |
Publications | PubMed=18404212
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors (By similarity).
ECO:0000250
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP31442
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 416.85| 108| 209| 48| 166| 1
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48- 166 (179.38/127.46) CQKIawsklgC.....IAYISQDglrvnVRHLQCRPSDGKW.VLS........EETPL..LPVTDAHGGHTLVHLCWNEPG.AELAVADSSGRVSIYSISI.AL.NSIAGHR...QAAF..............DPDDDGAQIVGMMW.LNTQR.TVH
170- 253 (97.12/51.06) ................................QAAKVQGRW.AYS...........PFrrRPIGPFHPVNKAGLVCVTRSGiIRLLYQNPDSRWA..EISA.ELkNTGYSDRlltHAAL..............VSTQGGILV............ATH
256- 385 (140.34/81.29) CQKI......ClyrvhIAWTPTQ.....YDPGQQKP.PAPWpVPSfrflhckvESQCD..VPGTNRNAGD.......NAQG.LP.SFTNSFYCLTGLDIVLpAL.DNPAGST...ANPWvvaiysaplhvtqdHPQQQGPASVIVRWqLDTGPlTLH
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 100.08| 36| 200| 687| 727| 3
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674- 722 (50.52/40.22) LSG.dqeaftqklkSTSSLPLIIllsSMSRAFLRFICRGLRGIY..AGYATA
725- 773 (49.55/25.68) LSGdarvyyaeiyqTLESAPIRI...DAYEKFLAGVDSAVRHAYhgAGFGDA
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