<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31402
Description |
Putative mediator of RNA polymerase II transcription subunit 14 |
Sequence | MDQNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPPNGMMPMNGEQTTPIIPQNRNISLSLVIHRLVEQSYNSLLGLTEGLPKANDLERKKAIVDYLDGTREKFLRLMVLIKWSEHVPTLTKANNIIDILNLEDSYLREAADLLINTQFSLVNARAPIYDVPTAIDVLTTGTYQRMPTNIKRVIPPPPLKPTQIESALERLNDIIKYKLFISDVPKEFQPITVSDGKAHIFVDDEYEAYLTIDGGSEKSNWVILSLNLFVYSKRNLNGEGPIKVAYDNKMKYVLDRVQNRIISSAQPLFELHNIVHYLCISSQMDILASQVENLKKTILKNNIRCVFGKDQSITVFYWLPEDFNLVGVTQHTLGNLMPNKHTNFKIYIDEHQKIKISHYPPITHPKNENYFKIASLNLETILLQAIELNAYDKVYLLNSLLLDNRITANTTSSSSSSSSNNNNTASPIINRNNNNGKPNLLSTKQSNNPLSRSFHLNDIKLIMSSRFSDENQNDSNGNNDHLPTVLRVMLYGSKFLDITVNFQNGKFSLIKSSNYIEFTNHLEQRLNKDPNEIESIVNVFKLKSLLTCFEEASLFLGLECFNKIPLQMNSSNNSESNQLANELFSDSNFICVSISLAKENNPYYLVISIKATCFTPSFHLLFCKMLPKSTIMTLDSIIKLESDQLNKLLKECPIGSISSSNNTNSNGNGPFQSYISTLLEKIVEASNQKINLLSIQSFLKKENINYYQPSQQDIENNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNGYKNNGITTTTSIVFLFNEQQIQKISPFLSNHISHQTPITISFKNGFYTLSFTQQRPFEYKKYGSGSNININSFGENNSNENYIYRKGNWIFKYQQTSDWFNSFCNDLMTISKITNISSQLLKQMETLEIYKQLITHLTIKPMSIEFVCFVGSNQTRTNVIMFVEKKTAEIKLSFQPYSNPLLVYLEKDINQSPTNDITNSLRAIINSNDISVYINSLISPLELSFYLPLEILVIPRSICQIRLLYKNLYGIDIKLISHEYCAISDSFYSLNSSKQVRLTSINQLHSFMEQRVSLQALDNPTGHRTSWLLPIKQFQKTISRIFIYLNSLNTLKFAQNLMKPNFQPLVPSNPSSQKFSNDYFIVSFSIRDYTSFDIDVTNKNLENSVPSNEELALFCQYFKKKVQQLNYRSQTIGSCIQMLTLPPKILWEFIRVLLEITGPKFDGYTIEISLNTSSIHSKNKESFFHIPDENQVYFILRYLNSSRTDIIPPDQFTDIPIIYNYNEKSIRYWNKLDSNSTSSSSSSTLPKKSLSIVEEVKQKFVEEVAKLIPDALNASSGKSSPISIFFKSFLPKIKPIFSNPTASTLLLIQQQQQQQQQQQQQQQQQQQQQQIENNNFASASSSIR |
Length | 1420 |
Position | Tail |
Organism | Dictyostelium discoideum (Slime mold) |
Kingdom | Amoebozoa |
Lineage | Eukaryota> Amoebozoa> Evosea> Eumycetozoa> Dictyostelia> Dictyosteliales>
Dictyosteliaceae> Dictyostelium.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.498 |
Instability index | 43.47 |
Isoelectric point | 8.52 |
Molecular weight | 162894.12 |
Publications | PubMed=15875012
PubMed=18515835
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors (By similarity).
ECO:0000250
|
GO - Cellular Component | core mediator complex GO:0070847 IBA:GO_Central
mediator complex GO:0016592 ISS:dictyBase
|
GO - Biological Function | transcription coregulator activity GO:0003712 IBA:GO_Central
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IBA:GO_Central
|
Interaction
Repeat regions
Repeats |
>MDP31402
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 106.17| 15| 15| 5| 19| 2
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13- 28 (32.46/14.73) QQQQQQQqQQQQQQQQ
29- 43 (36.86/17.48) QQQQQQQ.QQQQQQQQ
1392- 1406 (36.86/17.48) QQQQQQQ.QQQQQQQQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 63.36| 15| 15| 770| 784| 3
---------------------------------------------------------------------------
770- 784 (31.38/12.34) NNNNNNNNNNNNNNN
786- 800 (31.98/12.73) NNNNNNNGNNGYKNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 74.38| 23| 27| 494| 516| 4
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494- 516 (40.57/24.95) HLNDIKLIM..SSRFSDENQNDSNG
520- 544 (33.81/19.28) HLPTVLRVMlyGSKFLDITVNFQNG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 45.30| 16| 21| 1035| 1053| 5
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1035- 1053 (23.06/27.68) CQIRllyKNLYGID....IKLIS
1057- 1076 (22.25/14.80) CAIS...DSFYSLNsskqVRLTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 79.73| 28| 35| 949| 982| 6
---------------------------------------------------------------------------
949- 982 (37.11/39.87) NQTRTNVImfVEKKTA.....EIKLsfqpYSNPLLVYLE
986- 1018 (42.62/25.66) NQSPTNDI..TNSLRAiinsnDISV....YINSLISPLE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 54.75| 18| 21| 215| 235| 7
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215- 235 (25.27/23.93) KYKLFISDvpkEFQPITVSDG
236- 253 (29.48/17.92) KAHIFVDD...EYEAYLTIDG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 87.56| 19| 21| 846| 864| 8
---------------------------------------------------------------------------
812- 834 (20.56/ 7.43) .FNEQQiqkisPFLSNHISHQTPI
846- 864 (33.63/17.19) SFTQQR.....PFEYKKYGSGSNI
868- 886 (33.37/16.99) SFGENN.....SNENYIYRKGNWI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 51.90| 18| 22| 409| 428| 9
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409- 428 (25.39/26.10) YFKIASLNleTILLQA.IELN
430- 448 (26.50/18.79) YDKVYLLN..SLLLDNrITAN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 102.96| 33| 35| 1307| 1341| 10
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1309- 1341 (50.76/28.50) DSNSTSSSSSSTLPKKSLSIVEEVKQKFVEEVA
1346- 1378 (52.21/23.91) DALNASSGKSSPISIFFKSFLPKIKPIFSNPTA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 35.63| 10| 33| 565| 574| 13
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548- 557 (17.31/10.03) LIKSSNYIEF
565- 574 (18.32/11.15) LNKDPNEIES
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.52| 13| 23| 663| 675| 16
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663- 675 (22.61/13.21) KMLPKSTIMTLDS
686- 698 (20.91/11.66) KLLKECPIGSISS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 117.38| 35| 36| 1111| 1145| 17
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1111- 1145 (60.96/40.95) QKTISRIFIYLNSL.NTLKFAQNLMKPNFQPLVPSN
1149- 1184 (56.42/37.22) QKFSNDYFIVSFSIrDYTSFDIDVTNKNLENSVPSN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 47.90| 16| 23| 704| 720| 19
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704- 720 (23.34/15.81) SNGNGPFQSyISTLLEK
725- 740 (24.56/11.55) SNQKINLLS.IQSFLKK
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