Description | Mediator of RNA polymerase II transcription subunit 12 |
Sequence | MRAAWLIKMTCAYYAAISETKVKKRHVDPFMEWTQIITKYLWEQLQKMAEYYRPGPAGSGGCGSTIGPLPHDVEVAIRQWDYTEKLAMFMFQDGMLDRHEFLTWVLECFEKIRPGEDELLKLLLPLLLRYSGEFVQSAYLSRRLAYFCTRRLALQLDGVSSHSSHVISAQSTSTLPTTPAPQPPTSSTPSTPFSDLLMCPQHRPLVFGLSCILQTILLCCPSALVWHYSLTDSRIKTGSPLDHLPIAPSNLPMPEGNSAFTQQVRAKLREIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVLDSHSFERSDFSNSLDSLCNRIFGLGPSKDGHEISSDDDAVVSLLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAERCGESEAADEKGSIASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRSENERVEFFNLVLLFCELIRHDVFSHNMYTCTLISRGDLAFGAPGPRPPSPFDDPADDAEHKEAEGSSSSKLEDPGLSESMDIDPSSSVLFEDMEKPDFSLFSPTMPCEGKGSPSPEKPDVEKEVKPPPKEKIEGTLGILYDQPRHVQYATHFPIPQEESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVLEQITSFALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNELSVVEAELLLKSSDLVGSYTTSLCLCIVAVLRHYHACLILNQDQMAQVFEGLCGVVKHGMNRSDGSSAERCILAYLYDLYTSCSHLKNKFGELFSDFCSKVKNTIYCNVEPSESNMRWAPEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTGYCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRILLHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGDAELKGSGFTVTGGTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSAQAQRLMQLICYPHRLLDNEDGENPQRQRIKRILQNLDQWTMRQSSLELQLMIKQTPNNEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLTSLYSQVHQIVNNWRDDQYLDDCKPKQLMHEALKLRLNLVGGMFDTVQRSTQQTTEWAMLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGSMEENKRAYMNLAKKLQKELGERQSDSLEKVRQLLPLPKQTRDVITCEPQGSLIDTKGNKIAGFDSIFKKEGLQVSTKQKISPWDLFEGLKPSAPLSWGWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYYLEPLPLPPEDEEPPAPTLLEPEKKAPEPPKTDKPGAAPPSTEERKKKSTKGKKRSQPATKTEDYGMGPGRSGPYGVTVPPDLLHHPNPGSITHLNYRQGSIGLYTQNQPLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMTGVMGLEPSSYKTSVYRQQQPAVPQGQRLRQQLQAKIQSQGMLGQSSVHQMTPSSSYGLQTSQGYTPYVSHVGLQQHTGPAGTMVPPSYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQTLQQTPMISTMTPMSAQGVQAGVRSTAILPEQQQQQQQQQQQQQQQQQQQQQQQQQQYHIRQQQQQQILRQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQAAPPQPQPQSQPQFQRQGLQQTQQQQQTAALVRQLQQQLSNTQPQPSTNIFGRY |
Length | 2027 |
Position | Kinase |
Organism | Pan troglodytes (Chimpanzee) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Hominidae> Pan. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.505 |
Instability index | 59.00 |
Isoelectric point | 6.35 |
Molecular weight | 226335.88 |
Publications | PubMed=12777533 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. This subunit may specifically
regulate transcription of targets of the Wnt signaling pathway and SHH
signaling pathway (By similarity).
ECO:0000250 |
GO - Cellular Component | mediator complex GO:0016592 IBA:GO_Central |
GO - Biological Function | beta-catenin binding GO:0008013 IEA:InterPro transcription coactivator activity GO:0003713 IBA:GO_Central |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IBA:GO_Central |
Binary Interactions |
Repeats | >MDP31379 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 187.87| 15| 15| 1901| 1915| 1 --------------------------------------------------------------------------- 1901- 1915 (36.22/13.14) QQQQQQ....QQQ....QQQQQQ 1918- 1936 (30.62/10.06) QQQQQQ....QQQyhirQQQQQQ 1938- 1952 (32.75/11.23) LRQQQQ....QQQ....QQQQQQ 1953- 1967 (35.56/12.78) QQQQQQ....QQQ....QQQQHQ 1968- 1982 (29.50/ 9.45) QQQQQQ....AAP....PQPQPQ 1983- 2001 (23.24/ 6.00) SQPQFQrqglQQT....QQQQQT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 70.14| 16| 17| 1639| 1654| 2 --------------------------------------------------------------------------- 1607- 1623 (21.55/ 8.16) EKKAP.ePPKTDK..PGAAP 1638- 1653 (29.77/14.50) KRSQP..ATKTED..YGMGP 1654- 1673 (18.82/ 6.06) GRSGPygVTVPPDllHHPNP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.67| 13| 18| 196| 210| 3 --------------------------------------------------------------------------- 196- 210 (21.46/15.79) LLMCPQhrPLVFGLS 217- 229 (27.22/13.24) LLCCPS..ALVWHYS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 324.81| 116| 231| 63| 182| 4 --------------------------------------------------------------------------- 63- 133 (103.46/63.94) ...................................................................................................................................................................GSTIGPLPHDVE.V....AIRQWDYTEKLAMFMFQDGMLDRHEFLTWVLECFEKIRPGEDELLKLLLPLLL..RYSGE 134- 182 (30.67/27.87) FVQSAYLSRRLAYFCTRRLAlQLDGVSSHSShvISAQSTSTlPTTPAPQ................................................................................................................................................................................................ 297- 366 (75.10/43.70) .................................................pptsstpstpfsdllmcpqhrplvfglscilqtillccpsalvwhysltdsriktgspldhlpiapsnlpmpegnsaftqqvraklreieqqikergqavevrwsfdkcqeataGFTIGRVLHTLE.VldshSFERSDFSNSL......DSLCNRIFGLGPSKDGHE.ISSDDDAVVSLLCEWAVscKRSGR 370- 452 (115.59/73.74) MVVAKLLEKRQAEIEAERCG.ESEAADEKGS..IASGSLSA.PSAPIFQ..............................................................................................................................dV....LLQFLD..TQAPMLTDPRSENERVEFFNLVLLFCELIR...................... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 290.69| 96| 231| 1472| 1606| 5 --------------------------------------------------------------------------- 1472- 1600 (122.44/118.06) .................GERQSDSLEKV.RQLLP.LPKQTRdvITCEPQGSlIDTKGnkIAGFDSIFK.....KEGLQvsTKQKISPWDLFEGLkpsaplswgwfgtvrvdrrvargeeQQrlllyHT..HLRPRPRAYYLEP..LPLPPEDEEPPA 1719- 1830 (142.69/70.78) PTY..PgvlpttmtgvmGLEPSSYKTSVyRQQQPaVPQGQR..LRQQLQAK.IQSQG..MLGQSSVHQmtpssSYGLQ..TSQGYTPYVSHVGL.........................QQ.....HT..G....PAGTMVPPsySSQPYQSTHPST 1832- 1853 (25.55/10.55) PTLvdP..........................................................................................................................trHLQQRPSGY.............VHQQA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 87.56| 25| 26| 1007| 1031| 6 --------------------------------------------------------------------------- 1007- 1031 (44.13/26.67) CSEQDSEPGARLTCRILLHLFKTPQ 1035- 1059 (43.43/26.12) CQSDGNKPTVGIRSSCDRHLLAASQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 52.61| 16| 17| 485| 501| 9 --------------------------------------------------------------------------- 485- 501 (23.69/21.06) DDPAdDAEHKEAEGSSS 505- 520 (28.92/19.87) EDPG.LSESMDIDPSSS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 49.98| 15| 15| 700| 714| 10 --------------------------------------------------------------------------- 700- 714 (26.85/17.79) LEQITSFALG.MSYHL 716- 731 (23.14/14.25) LVQHVQFIFDlMEYSL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 44.70| 14| 23| 1408| 1421| 14 --------------------------------------------------------------------------- 1408- 1421 (24.50/17.68) LLEIIISGTV..DMQS 1432- 1447 (20.20/13.14) MLSVLINGTLaaDMSS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 43.96| 11| 21| 922| 932| 15 --------------------------------------------------------------------------- 922- 932 (21.19/13.19) AILCAELTGYC 945- 955 (22.77/14.81) ALCCSSNNGTC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 322.45| 104| 202| 1086| 1203| 17 --------------------------------------------------------------------------- 1086- 1203 (166.70/119.29) GFTVTGGTEELpeEEGGG.GSGGRRQGGR..NISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDL.....QDPVLSSaqaqrlmqliCYPHRLLD.......NEDGenPQRQRIKRILQNLDQWTM 1288- 1406 (155.75/86.66) GHVLKAAGEEL..EKGQHlGSSSRKERDRqkQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLTSLYSQVHQIvnnwrDDQYLDD..........CKPKQLMHealklrlNLVG..GMFDTVQRSTQQTTEWAM --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 101.41| 26| 202| 759| 786| 18 --------------------------------------------------------------------------- 759- 786 (39.83/36.80) SDLVGSYTTSLClCIVAVLRHYHaCLIL 788- 804 (21.66/10.25) QDQMAQVFEGLC....GVVKH....... 967- 990 (39.92/26.55) SDL..SFHDSLA.TFVAILIARQ.CLLL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) NIFGRY 2) QQYHIRQQQQQQILRQQQQ | 2022 1925 | 2027 1943 |
© 2021 Shailesh Lab
Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab