Description | Isoform 2 of Mediator of RNA polymerase II transcription subunit 12 |
Sequence | MAAFGILSYEHRPLKRLRLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVNFNPAKISSNFSSIIAEKLRCNTLSDTGRRKSLMNQKDNFWLVTARSQSAINTWFTDLAGTKPLTHLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMTCAYYAAMSETKVKKKNTADPFTEWTQIITKYLWEQLQKMAEYYRPGPAGSGGCGSTIGPLPHDVEMAIRQWDYNEKLALFMFQDGMLDRHEFLTWVLECFEKIRPGEDELLKLLLPLLLRYSGEFVQSAYLSRRLAYFCTRRLALQLDGVSSHSSHVIAAQSTSSLPTTPAPQPPTSSTPSTPFSDLLMCPQHRPLVFGLSCILQTILLCCPSALVWHYSLTDSRIKTGSPLDHLPIAPSNLPMPEGNSAFTQQVRAKLREIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVLDSHSFERSDFSNSLDSLCNRIFGLGPSKDGHEISSDDDAVVSLLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAERCGESEAADEKGSVASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRSESERVEFFNLVLLFCELIRHDVFSHNMYTCTLISRGDLAFGAPGPRPPSPFDDPTDDPERKEAEGSSSSKLEDPGLSESMDIDPSSSVLFEDMEKPDFSLFSPTMPCEGKGSPSPEKPDVEKEVKPPAKEKIEGTLGILYDQPRHVQYATHFPIPQEESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVLEQITSFALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNELSVVEAELLLKSSDLVGSYTTSLCLCIVAVLRHYHACLILNQDQMAQVFEGLCGVVKHGMNRSDGSSAERCILAYLYDLYTSCSHLKSKFGELFSDFCSKVKNTIYCNVEPSESNMRWAPEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTGYCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRILLHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGDAELKGSGFTVPGGTEELPEEEGGGGSSGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSAQAQRLMQLICYPHRLLDNEDGENPQRQRIKRILKNLDQWTMRQSSLELQLMIKQTPNTEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHLGSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLASLHSQVHQIVINWRENQYLDDCKPKQLMHEALKLRLNLVGGMFDTVQRSTQQTTEWAQLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGSMEENKRAYMNLVKKLQKDLGERQSDSLEKVHQLLPLPKQNRDVITCEPQGSLIDTKGNKIAGFDSIFKKEGLQVSTKQKISPWELFEGLKPSTAPLSWAWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYYLEPLPLPPEDEEPPAPALLEPEKKAPEPPKTDKPGAAPPSTEERKKKSTKGKKRSQPATKNEDYGMGPGRSGPYGVTVPPDLLHHANPGSISHLSYRQSSMGLYTQNQPLPAGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMSTVMGLEPSSYKTSVYRQQQPTVPQGQRLRQQLQAKIQSQGMLGQSSVHQMTPSSSYGLQTSQGYTSYVSHVGLQQHTGPAGTMVPPSYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQTLQQTPMMGTMTPLSAQGVQAGVRSTSILPEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHIRQQQQQQQMLRQQQQQQQQQQQQQQQQQQQQQQQQQQQPHQQQQQAAPPQPQPQSQPQFQRQGLQQTQQQQQTAALVRQLQQQLSNTQPQPSTNIFGRY |
Length | 2169 |
Position | Kinase |
Organism | Mus musculus (Mouse) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Glires> Rodentia> Myomorpha> Muroidea> Muridae> Murinae> Mus> Mus. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.519 |
Instability index | 57.91 |
Isoelectric point | 6.78 |
Molecular weight | 244558.35 |
Publications | PubMed=19468303 PubMed=15489334 PubMed=9702738 PubMed=21183079 PubMed=23806337 PubMed=24129315 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. This subunit may specifically
regulate transcription of targets of the Wnt signaling pathway and SHH
signaling pathway (By similarity).
ECO:0000250 |
GO - Cellular Component | mediator complex GO:0016592 IDA:MGI nucleoplasm GO:0005654 TAS:Reactome nucleus GO:0005634 ISO:MGI ubiquitin ligase complex GO:0000151 ISO:MGI |
GO - Biological Function | beta-catenin binding GO:0008013 IEA:InterPro chromatin binding GO:0003682 IDA:MGI protein C-terminus binding GO:0008022 ISO:MGI protein domain specific binding GO:0019904 ISO:MGI RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000978 IDA:MGI thyroid hormone receptor binding GO:0046966 ISO:MGI transcription coactivator activity GO:0003713 IGI:MGI transcription coregulator activity GO:0003712 ISO:MGI transcription factor binding GO:0008134 IPI:MGI ubiquitin protein ligase activity GO:0061630 IEA:Ensembl |
GO - Biological Process | axis elongation involved in somitogenesis GO:0090245 IMMGI canonical Wnt signaling pathway GO:0060070 IMMGI embryonic brain development GO:1990403 IMMGI embryonic neurocranium morphogenesis GO:0048702 IMMGI embryonic organ development GO:0048568 IMMGI endoderm development GO:0007492 IMMGI heart development GO:0007507 IMMGI neural tube closure GO:0001843 IMMGI neural tube development GO:0021915 IMMGI oligodendrocyte development GO:0014003 IMMGI positive regulation of transcription by RNA polymerase II GO:0045944 ISO:MGI positive regulation of transcription initiation from RNA polymerase II promoter GO:0060261 ISO:MGI positive regulation of transcription, DNA-templated GO:0045893 ISO:MGI post-anal tail morphogenesis GO:0036342 IMMGI protein ubiquitination GO:0016567 ISO:MGI regulation of transcription by RNA polymerase II GO:0006357 IBA:GO_Central Schwann cell development GO:0014044 IMMGI somitogenesis GO:0001756 IMMGI spinal cord development GO:0021510 IMMGI stem cell population maintenance GO:0019827 IMMGI Wnt signaling pathway, planar cell polarity pathway GO:0060071 IMMGI |
Binary Interactions | [A2AGH6<-->Q8R3L8: Cdk8] NbExp=3 EBI-5744969,EBI-5745402 [A2AGH6<-->P37173: TGFBR2] Xeno NbExp=3, |
Repeats | >MDP31378 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 208.75| 16| 16| 2056| 2071| 1 --------------------------------------------------------------------------- 2056- 2071 (38.86/16.37) QQQQQQQQQQQQQ...QQQ 2073- 2088 (38.86/16.37) QQQQQQQQQQQQQ...QQQ 2094- 2109 (35.58/14.34) QQQQQQMLRQQQQ...QQQ 2110- 2125 (38.86/16.37) QQQQQQQQQQQQQ...QQQ 2126- 2143 (26.87/ 8.98) QQQQPHQQQQQ.AappQPQ 2144- 2159 (29.73/10.74) PQSQPQFQRQGLQ...QTQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 49.98| 15| 15| 854| 868| 2 --------------------------------------------------------------------------- 854- 868 (26.85/20.12) LEQITSFALG.MSYHL 870- 885 (23.14/16.14) LVQHVQFIFDlMEYSL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 53.23| 15| 612| 21| 35| 3 --------------------------------------------------------------------------- 21- 35 (31.21/13.79) PPDVY..P.QDPKQKEDE 634- 651 (22.02/ 7.67) PPSPFddPtDDPERKEAE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 51.99| 16| 18| 344| 361| 4 --------------------------------------------------------------------------- 344- 361 (26.83/22.06) STPFSDLLM.CPQhrPLVF 364- 380 (25.16/12.83) SCILQTILLcCPS..ALVW --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 42.29| 13| 16| 1676| 1689| 5 --------------------------------------------------------------------------- 1676- 1689 (21.19/17.60) EGLQVSTkQKIS.PW 1693- 1706 (21.09/11.65) EGLKPST.APLSwAW --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 484.55| 155| 231| 169| 336| 6 --------------------------------------------------------------------------- 169- 336 (243.44/181.13) AMSETKVKKKNTAdpFTEWTQI....ITKYLWEQLQKMAEYYRPGPAGSGGCGSTIGPLPHDVEM....AIRQWDYNEKLalfmfqDGMLDRHEFLTWVLECFEkIRPGEDELLKLLLPLLL..RYSGE...FVQSAYLSRRLAYFCTRRLAlQLDGVSSHSShvIAAQSTSSlPTTPAPQ 401- 568 (241.11/145.14) APSNLPMPEGNSA..FTQQVRAklreIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVldshSFERSDFSNSL......DSLCNRIFGLGPSKDGHE.ISSDDDAVVSLLCEWAVscKRSGRhraMVVAKLLEKRQAEIEAERCG.ESEAADEKGS..VASGSLSA.PSAPIFQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 557.89| 181| 201| 1075| 1275| 7 --------------------------------------------------------------------------- 739- 820 (70.95/31.75) ......................................................................................................................FPI.PQEESCSHEC...NQRLVvlfG.VGKQRDdaRHAI....KKITKD....ILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGED.GQKRRRNR.. 1075- 1267 (277.07/205.73) IAILCAELTGYCKSlSAEWLGVLKALC.....CSSNNGTCG....FNDLLCNVDVSDLSfHDSLATFVAIL...IARQCLLLEDLIRcAAIPSLLNAAcsEQDSEPGArlTCRILLHLFKT.PQLNPCQSDG...NKPTV...G.IRSSCD..RHLLAASqNRIVDGavfaVLKAVFVLGDAELKGSGFTVPGGTEELPEEEGGG.GSSGRRQGGR 1301- 1468 (209.87/116.70) LCEDSNDLQDPVLS.SAQAQRLMQLICyphrlLDNEDGENPqrqrIKRILKNLDQWTMR.QSSLELQLMIKqtpNTEMNSLLENIAK.ATIEVFQQSA..ETGSSSGS..TASNMPSSSKTkPVLSSLERSGvwlVAPLI...AkLPTSVQ..GHVLKAA..................................GEEL..EKGQHlGSSSRKERDR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 95.64| 23| 45| 1858| 1880| 8 --------------------------------------------------------------------------- 1812- 1831 (31.25/11.65) GPY.GVTVPPDLL.....HHANP....GSI 1858- 1880 (42.03/18.45) DPYRPVRLPMQKLPT...RPTYP....GVL 1991- 2016 (22.36/ 6.05) DPTRH....LQQRPSgyvHQQAPtyghGLT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 46.14| 13| 16| 1028| 1040| 9 --------------------------------------------------------------------------- 1028- 1040 (25.11/15.54) ENPAA.HTFTYTGL 1046- 1059 (21.03/11.76) ENPANrYSFVCNAL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 138.02| 29| 103| 1921| 1951| 10 --------------------------------------------------------------------------- 1921- 1951 (48.73/26.12) IQSQGMLGQSSvhQMTPSSSYGLQTSQGYTS 1956- 1980 (44.86/18.83) VGLQQHTGPAG..TMVP.PSYS...SQPYQS 2026- 2051 (44.43/18.58) LQQTPMMG.....TMTPLSAQGVQAGVRSTS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 72.58| 24| 608| 1553| 1577| 18 --------------------------------------------------------------------------- 1549- 1573 (36.76/29.31) QRSTQQTTEWAQlLLEIIISGTV..DM 1574- 1599 (35.83/23.35) QSNNELFTTVLD.MLSVLINGTLaaDM --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 54.12| 16| 101| 1731| 1747| 19 --------------------------------------------------------------------------- 1731- 1747 (28.16/22.09) HLRPrPRAYYLEP...LPLP 1750- 1768 (25.96/14.34) DEEP.PAPALLEPekkAPEP --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) NIFGRY 2) QQQMLRQQ 3) QQQQYHIRQQQ | 2185 2097 2085 | 2190 2104 2095 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab