Description | Mediator of RNA polymerase II transcription subunit 11 |
Sequence | MCSASAAPQRTDPEDSCKVRWVWEKAACPELVRDKRWAEGSKIEHEPHKSQPPRSHRFPPPTKPKRFGSSSAHARPSETPERVTATQSCPLSCSKLSELDFRLLSNAPRIQPTSQSQSQSQSQPQSHSSPRLLFSLIVVSPTLQPTTTITRFTPSIDDRSSTLDVRPSSTPAIAPWHRHRIYTPFPRCLPNMSSSAAVASAHDPALDLLPSELQDTIMEQKFAQIREQRREAHHVLREAKQRTRNQQTDQQILMLMQTDERLASLLSQAADSMRALLPVKPPSPDTVRLAPSDATSASASSSSASEPTKGAKAFEVKAQQWFSILNEVQYSLRSAPAGSSSGLFDLDWHEPSAAAAATSPTSPTGSSGARAKNDIMSLFSAPPPAAARAPAANTTNASAFDMAPPAAAAASNPWSAPSAPAPSNNPLFDTSDVWSSTTAPTAPQSQPPKSDAFADIWGDFK |
Length | 461 |
Position | Head |
Organism | Pseudozyma antarctica (strain T-34) (Yeast) (Candida antarctica) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Moesziomyces. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.590 |
Instability index | 74.58 |
Isoelectric point | 8.72 |
Molecular weight | 49762.92 |
Publications | PubMed=23558529 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364147 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP31278 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 64.39| 22| 27| 259| 280| 2 --------------------------------------------------------------------------- 259- 280 (36.65/18.98) DE.RLAS..LLSQAADSMRALLPVK 285- 309 (27.73/12.44) DTvRLAPsdATSASASSSSASEPTK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 85.21| 24| 27| 29| 54| 3 --------------------------------------------------------------------------- 29- 54 (40.81/22.38) PELVRDKRWaeGSKIEHEPHKSQPPR 59- 82 (44.40/19.81) PPPTKPKRF..GSSSAHARPSETPER --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 101.57| 27| 55| 374| 400| 4 --------------------------------------------------------------------------- 334- 379 (30.28/ 8.62) SAPagsssglfdldwhePSAAAAAtsPTSPTGSSGAR............................aknDIMSLF 380- 437 (33.03/10.06) SAP..............PPAAARA..PAANTTNASAFdmappaaaaasnpwsapsapapsnnplfdtsDVWSST 438- 460 (38.27/12.80) TAP..............T.....A..PQSQPPKSDAF..............................aDIWGDF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 68.89| 22| 28| 152| 177| 5 --------------------------------------------------------------------------- 152- 173 (38.92/23.93) FTP...SIDDRSSTLDVRPSSTPAI 182- 206 (29.97/ 7.96) YTPfprCLPNMSSSAAVASAHDPAL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 88.46| 25| 26| 87| 112| 6 --------------------------------------------------------------------------- 87- 112 (42.71/26.24) QSCPLSCSKlSELDFRLLSNAPRIQP 121- 145 (45.75/24.29) QSQPQSHSS.PRLLFSLIVVSPTLQP --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) CKVRWVWEKAAC 2) FADIWGDFK 3) IMSLF 4) LVRDKRWAEGSKIEHEPHK 5) PPRSH 6) WHRHRIY | 17 453 375 31 52 176 | 28 461 379 49 56 182 |
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