<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31276

Description Zinc-binding oxidoreductase
SequenceMGVSSTARLPSLGAQSIPPLFSHLQHTSNAKVVARWSITIRSFRAVPVPFNAWPSDSGPANEDAASTSAVQNAASASAASASGAPPLTKPRTMWQVWLSDHPGVVFVIVEDTGKSSRAKAWRDWEVAVKKWKKARRAEIEARKTREAQARLESENKKQSEAAEATAGSCATAAADPNATAHSTNDQTQPMDVDVAKTEGADSASGPASSAQPTHEEKEEEPIASAGARPRLQLPSHTRYTGGVDWRVRVGSVMGGGGRSAGAVVEAEFIPPAAVLPTSKFMQDFLMALFPPGLVPAQPAQPVQAAGVVNGAASAVGTPRGAHATLPGAAQSAQGGFNYTIGGGTEGVQPNRSFNIPVVSDQLWEEVVPRSGESWRQRISQRSHHMRAAKRLQRRQRASEPAAPHRITDTNGDDAFGWHSFGTDEHGADKEWQDDEVSCSDSEIEGALPNGHAAALAGTAVTMQQVDEDEDDDDDRPLGAPAWTQPKPNAAAQAEPNVAPKPSEDTVQLIFQGLRSDADDPEGDDVGAWSGVERGRRIAFQYVQMLRAEGII
Length551
PositionHead
OrganismPseudozyma antarctica (strain T-34) (Yeast) (Candida antarctica)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Moesziomyces.
Aromaticity0.06
Grand average of hydropathy-0.542
Instability index47.27
Isoelectric point5.42
Molecular weight58454.78
Publications
PubMed=23558529

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31276
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     205.18|      55|      98|      35|      90|       1
---------------------------------------------------------------------------
   35-   90 (89.85/42.51)	RWSITI.............RSFRAVPVPFNAWPSDSGPANEDAASTSAvQNAASASAASASGAPPLTKP
  123-  189 (73.45/30.89)	DWEVAVkkwkkarraeieaRKTREAQARLESENKKQSEAAEATAGSCA..TAAADPNATAHSTNDQTQP
  202-  234 (41.88/14.62)	.................................SASGPAS.SAQPTH..EEKEEEPIASAGARPRLQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.87|      15|     128|     318|     333|       2
---------------------------------------------------------------------------
  301-  315 (25.57/13.66)	PVQAAGVVNGAA.SAV
  318-  333 (23.30/16.98)	PRGAHATLPGAAqSAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.78|      22|      43|     461|     482|       6
---------------------------------------------------------------------------
  461-  482 (42.21/27.21)	TMQQVDEDEDDDDDRPLG..APAW
  505-  528 (35.57/21.65)	TVQLIFQGLRSDADDPEGddVGAW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31276 with Med20 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KKARRAEIEARKTREAQARLESENKKQSEAAEATAGSCATAAADPNATAHSTNDQTQPMDVDVAKTEGADSASGPASSAQPTHEEKEEEPIASAGARPRLQLPSHTRYT
2) PAQPVQAAGVVNGAASAVGTPRGAHATLPGAAQSAQGGFNYTIGGG
3) PRSGESWRQRISQRSHHMRAAKRLQRRQRASEPAAPHRITDTNGDDAFGWHSFGTDEHGADKEWQDDEVSCSDSEIEGALPNGHAAALAGTAVTMQQVDEDEDDDDDRPLGAPAWTQPKPNAAAQAEPNVAPKPSEDTVQLIFQGLRSDADDPEGDDVGAWSG
4) PSDSGPANEDAASTSAVQNAASASAASASGAPP
132
298
368
54
240
343
530
86










Molecular Recognition Features






MoRF SequenceStartStop




1) VQLIFQGLRSDADD
506
519