<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31267

Description U-box domain-containing protein 33
SequenceMEAHRRWDTSGSGSRYSFRTSNLAKDGAQVVVAHVHRPAQMIPMMGAKMHYTRLDPEQVKDYRKQELEKALERLEEYVVICTILKVNCEKIIIEKDDVAKGLEELIVLHGITRLVMGAAADKHYSKKMKRPKSKTALRLMEAEASPCKIWFTCKGELICTREANTTIPMIPPSPASTVASTLSASSISSRMRSITIHHSESEAPSSNGSPQQNLNRSRTEVMRHHSRGAGGTPPQLFEPLELNANARPTRTPLSSMDSWDEFGRRSQSSWYNLSRNYDAISVSESATHHPMHESDDDRFSSPFHELENPGADAEMYSRLEEALRETQESKKEVFEESTKRRKAELDLLSALQKAKELEKLYHHELRQRKTIEETLVRQAQELEATKIQCDTIYDQLHDAEEQKAVLEQRMTEMESALRDGEEKLATSKCLLEALQADKENLQQERDAAAEELRQKSEQRISMATEALNTEFSAVELEQATRSFDEALKIGEGGFGCVYKGSLRSTTVAIKLLHPKSLQGQSEFNQEPANILLDANLVSKLGDFGICRLLTQSGTSTAATTLYRTTTPRGTFAYMDPEFLSSGELTPRSDVYSLGIIILQLLTGRRPQKIAEVVEDAVEKGELHTVLDTSAGAWPFVQANQLAHLGLRCAEMSRRRRPDLAREVWTVVEPLMKAASLTARRPTFAPSPDEASTPSYFVCPIFQEMMSDPHIAADGFTYEAEAIRGWLDSGHDTSPMTNLKLAHRELTPNRGLRSVILEWQLQHQRYHEDWR
Length770
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.593
Instability index56.04
Isoelectric point5.98
Molecular weight86822.07
Publications
PubMed=23535596

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31267
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     160.78|      46|      48|     372|     417|       1
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  308-  383 (42.87/25.53)	NPGADAE.MYSRLEE..AlretqESKKEVFEEstkrRKAELDllSALqkakeleklyhhelrqrktiEETLVRQ.....AQELE
  384-  432 (70.77/47.40)	ATKIQCDTIYDQLHD..A.....EEQKAVLEQ....RMTEME..SAL.................rdgEEKLATS.....KCLLE
  433-  477 (47.14/28.88)	ALQADKENL.QQERDaaA.....EELRQKSEQ....RISMAT..EAL...........................ntefsAVELE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     195.61|      60|      63|     163|     225|       3
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  163-  225 (92.41/63.23)	ANTTIPMIpPSPASTVASTLSASSISSRMRSITIHHSESEAPSSNGSpqQNLNR.SRTEVMRHH
  229-  289 (103.19/59.68)	AGGTPPQL.FEPLELNANARPTRTPLSSMDSWDEFGRRSQSSWYNLS..RNYDAiSVSESATHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.89|      25|      49|     593|     618|       4
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  593-  618 (36.15/30.54)	LGIIILQLLTGRRPQkIAEVVEDAVE
  644-  668 (44.74/32.92)	LGLRCAEMSRRRRPD.LAREVWTVVE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31267 with Med32 domain of Kingdom Viridiplantae
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